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PHACTR3
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:92.4 nTPM
HPA:92.4 nTPM
GTEx:68.2 nTPM
FANTOM5:291.5 Scaled Tags Per Million
Pig:35.2 nTPM
Mouse:103.3 nTPM
Allen mouse:6.7 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 92.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 66.5
2288 Male, age 75, left hemisphere 72.6
1781 Male, age 74, unknown 72.3
2289 Male, age 61, right hemisphere 69.6
2481 Female, age 94, left hemisphere 66.5
2290 Female, age 72, unknown 65.4
2846 Female, age 79, unknown 65.0
1854 Male, age 80, left hemisphere 60.8
1857 Female, age 85, left hemisphere 59.3
Claustrum
nTPM: 88.0
2292 Female, age 85, both hemispheres 102.9
1956 Male, age 74, unknown 93.5
2568 Male, age 61, both hemispheres 92.3
2645 Female, age 72, unknown 88.3
2491 Male, age 75, both hemispheres 86.5
2196 Female, age 79, unknown 85.1
2284 Female, age 91, both hemispheres 83.9
2198 Male, age 80, both hemispheres 83.0
2392 Female, age 94, both hemispheres 76.1
Globus pallidus, externus
nTPM: 92.4
2646 Male, age 61, right hemisphere 112.6
2567 Female, age 72, unknown 103.6
1996 Male, age 80, right hemisphere 92.0
2772 Female, age 79, unknown 80.5
2395 Male, age 75, both hemispheres 73.3
Globus pallidus, internus
nTPM: 92.0
2111 Female, age 85, right hemisphere 103.4
2778 Female, age 91, both hemispheres 95.3
2566 Female, age 72, unknown 94.7
2287 Male, age 75, right hemisphere 88.5
1818 Male, age 74, unknown 88.1
2037 Male, age 80, right hemisphere 86.9
2483 Female, age 94, right hemisphere 86.8
Nucleus accumbens
nTPM: 67.0
2698 Female, age 72, unknown 74.0
2391 Female, age 94, left hemisphere 71.6
2732 Male, age 80, right hemisphere 70.5
1783 Male, age 74, unknown 67.4
2286 Male, age 75, left hemisphere 67.2
1806 Female, age 85, left hemisphere 66.3
2824 Male, age 61, right hemisphere 66.0
1856 Female, age 91, right hemisphere 53.2
Nucleus basalis of Meynert
nTPM: 77.8
2569 Male, age 61, both hemispheres 113.2
2484 Female, age 94, left hemisphere 68.2
2821 Male, age 75, both hemispheres 66.4
2393 Male, age 80, right hemisphere 63.4
Nucleus of the diagonal band
nTPM: 70.7
2029 Male, age 61, right hemisphere 81.4
1979 Male, age 74, unknown 70.9
2195 Female, age 85, both hemispheres 69.8
2775 Male, age 80, right hemisphere 67.4
1812 Female, age 91, both hemispheres 64.3
Olfactory tubercle
nTPM: 72.5
2856 Male, age 75, right hemisphere 82.3
2487 Female, age 94, left hemisphere 73.1
1998 Female, age 91, both hemispheres 67.8
1846 Male, age 80, right hemisphere 66.9
Putamen
nTPM: 68.7
2647 Male, age 75, left hemisphere 86.2
2489 Female, age 72, unknown 75.7
1829 Male, age 74, unknown 73.7
2482 Female, age 94, left hemisphere 67.3
1937 Female, age 91, right hemisphere 62.0
2466 Female, age 79, unknown 61.3
1838 Male, age 80, right hemisphere 55.1
Septal nuclei
nTPM: 70.8
2199 Male, age 80, right hemisphere 75.3
2059 Female, age 85, both hemispheres 74.8
2394 Male, age 61, left hemisphere 72.6
2629 Female, age 94, right hemisphere 70.8
1960 Male, age 74, unknown 70.5
2031 Female, age 72, unknown 66.0
2009 Female, age 91, both hemispheres 65.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 68.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 55.3
Samples: 246

Max nTPM: 128.5
Min nTPM: 23.7
Std nTPM: 17.8
Median nTPM: 51.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 128.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 123.8
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 115.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 115.4
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 107.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 100.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 99.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 97.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 97.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 96.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 93.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 47.7
Samples: 246

Max nTPM: 124.2
Min nTPM: 16.7
Std nTPM: 19.0
Median nTPM: 42.8
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 124.2
GTEX-11TTK-0011-R6b-SM-DNZZW 60-69 years, female 119.3
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 119.1
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 114.5
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 112.6
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 105.1
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 104.0
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 101.7
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 96.3
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 94.5
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 92.9
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Brain - Putamen (basal ganglia)
Average nTPM: 68.2
Samples: 205

Max nTPM: 172.0
Min nTPM: 25.3
Std nTPM: 24.1
Median nTPM: 63.1
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 172.0
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 171.4
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 156.2
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 144.5
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 130.6
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 130.6
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 125.1
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 123.5
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 120.3
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 117.9
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 116.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 291.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 100.5
FF:10164-103B2 76 years, female 100.5
Globus pallidus
Scaled Tags Per Million: 291.5
FF:10175-103C4 60 years, female 322.0
FF:10161-103A8 76 years, female 261.0
Nucleus accumbens
Scaled Tags Per Million: 100.4
FF:10037-101F1 23-56 years, mixed 100.4
Putamen
Scaled Tags Per Million: 93.2
FF:10176-103C5 60 years, female 93.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 35.2
Pig sample Sample description nTPM
Caudate
nTPM: 29.9
Samples: 4

Max nTPM: 35.0
Min nTPM: 26.2
Sample A Female 26.2
Sample B Female 29.5
Sample C Male 35.0
Sample D Male 28.7
Putamen
nTPM: 35.1
Samples: 4

Max nTPM: 43.1
Min nTPM: 31.0
Sample A Female 32.4
Sample B Female 31.0
Sample C Male 34.0
Sample D Male 43.1
Septum
nTPM: 23.7
Samples: 4

Max nTPM: 26.7
Min nTPM: 17.4
Sample A Female 26.0
Sample B Female 24.8
Sample C Male 17.4
Sample D Male 26.7
Ventral pallidum
nTPM: 33.5
Samples: 4

Max nTPM: 39.7
Min nTPM: 25.9
Sample A Female 25.9
Sample B Female 32.6
Sample C Male 35.6
Sample D Male 39.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 103.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 103.3
Samples: 4

Max nTPM: 108.9
Min nTPM: 92.7
Sample A Male 92.7
Sample B Male 108.8
Sample C Female 108.9
Sample D Female 102.8
Septum
nTPM: 67.3
Samples: 4

Max nTPM: 73.1
Min nTPM: 62.2
Sample A Male 67.5
Sample B Male 62.2
Sample C Female 66.4
Sample D Female 73.1
Ventral forebrain
nTPM: 95.0
Samples: 4

Max nTPM: 100.5
Min nTPM: 83.5
Sample A Male 100.5
Sample B Male 83.5
Sample C Female 97.0
Sample D Female 99.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 6.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 6.7
69837922 Antisense, RP_050224_01_B10, Mouse strain C57BL/6J (56 days, male) 6.7
Pallidum
Expression energy: 5.6
69837922 Antisense, RP_050224_01_B10, Mouse strain C57BL/6J (56 days, male) 5.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.