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PHACTR3
HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:82.3 nTPM
HPA:82.3 nTPM
GTEx:80.4 nTPM
FANTOM5:210.2 Scaled Tags Per Million
Pig:46.3 nTPM
Mouse:98.0 nTPM
Allen mouse:6.6 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 82.3
Sample id Sample description nTPM
Hippocampus
nTPM: 77.9
2529 Female, age 94, left hemisphere 88.5
2148 Female, age 91, left hemisphere 79.2
2621 Female, age 67, right hemisphere 76.8
1911 Female, age 85, right hemisphere 76.4
1855 Male, age 76, left hemisphere 75.5
1898 Male, age 80, left hemisphere 70.7
Dentate gyrus
nTPM: 73.7
2530 Female, age 94, left hemisphere 85.4
2246 Female, age 85, both hemispheres 75.2
2531 Female, age 67, both hemispheres 74.8
2528 Male, age 74, both hemispheres 72.4
2010 Male, age 76, both hemispheres 68.5
1927 Female, age 91, both hemispheres 66.1
Entorhinal gyrus
nTPM: 82.3
2686 Male, age 75, right hemisphere 95.3
2117 Female, age 91, right hemisphere 89.4
2613 Female, age 94, left hemisphere 80.1
2764 Male, age 80, right hemisphere 78.4
1787 Male, age 76, left hemisphere 77.4
1938 Female, age 85, left hemisphere 73.2
Hippocampus, CA1
nTPM: 72.5
2527 Male, age 74, both hemispheres 82.3
1873 Female, age 85, both hemispheres 73.2
2749 Male, age 80, left hemisphere 71.8
2082 Female, age 91, right hemisphere 69.8
2045 Male, age 76, both hemispheres 65.4
Hippocampus, CA2
nTPM: 75.8
1963 Male, age 80, left hemisphere 83.9
2437 Female, age 94, left hemisphere 80.6
1940 Female, age 85, left hemisphere 77.3
2113 Female, age 91, right hemisphere 75.3
2249 Male, age 74, both hemispheres 71.6
1892 Male, age 76, both hemispheres 65.9
Hippocampus, CA3
nTPM: 69.1
2861 Female, age 67, both hemispheres 78.6
1891 Female, age 85, both hemispheres 77.6
2620 Female, age 94, left hemisphere 70.4
2137 Male, age 80, left hemisphere 65.8
1867 Male, age 76, both hemispheres 61.1
2436 Male, age 74, both hemispheres 60.8
Parahippocampal cortex
nTPM: 76.6
2692 Male, age 74, both hemispheres 89.7
2532 Female, age 72, left hemisphere 81.9
2622 Female, age 67, right hemisphere 80.5
2245 Female, age 91, both hemispheres 79.5
1933 Female, age 85, both hemispheres 73.8
2693 Female, age 94, both hemispheres 73.8
1990 Female, age 91, right hemisphere 73.4
2018 Male, age 76, both hemispheres 72.9
2250 Female, age 67, right hemisphere 70.7
1850 Male, age 80, both hemispheres 70.0
Perirhinal gyrus
nTPM: 70.6
2521 Female, age 94, right hemisphere 75.4
2848 Male, age 76, right hemisphere 71.0
1794 Male, age 80, right hemisphere 70.5
1847 Female, age 91, left hemisphere 68.2
1841 Female, age 85, right hemisphere 68.0
Subiculum
nTPM: 80.7
2619 Male, age 74, both hemispheres 86.6
2438 Female, age 94, left hemisphere 85.1
1977 Female, age 85, both hemispheres 80.1
2729 Female, age 91, right hemisphere 78.7
1901 Male, age 80, both hemispheres 77.9
2042 Male, age 76, both hemispheres 75.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 80.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 80.4
Samples: 197

Max nTPM: 205.1
Min nTPM: 16.0
Std nTPM: 26.4
Median nTPM: 75.8
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 205.1
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 179.1
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 160.7
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 160.5
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 156.1
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 149.6
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 147.8
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 143.3
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 136.1
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 135.2
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 129.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 210.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 210.2
FF:10153-102I9 76 years, female 231.1
FF:10169-103B7 60 years, female 189.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 46.3
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 39.4
Samples: 4

Max nTPM: 48.9
Min nTPM: 28.7
Sample A Female 48.9
Sample B Female 36.6
Sample C Male 43.2
Sample D Male 28.7
Entorhinal cortex
nTPM: 46.2
Samples: 4

Max nTPM: 52.6
Min nTPM: 43.1
Sample A Female 45.0
Sample B Female 43.1
Sample C Male 52.6
Sample D Male 44.2
Subiculum
nTPM: 39.2
Samples: 4

Max nTPM: 51.3
Min nTPM: 33.6
Sample A Female 51.3
Sample B Female 38.1
Sample C Male 33.8
Sample D Male 33.6
Ventral hippocampus
nTPM: 36.6
Samples: 4

Max nTPM: 41.2
Min nTPM: 29.4
Sample A Female 35.0
Sample B Female 29.4
Sample C Male 41.2
Sample D Male 40.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 98.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 98.0
Samples: 4

Max nTPM: 101.3
Min nTPM: 95.9
Sample A Male 96.9
Sample B Male 95.9
Sample C Female 97.8
Sample D Female 101.3
Hippocampal formation
nTPM: 86.5
Samples: 4

Max nTPM: 91.8
Min nTPM: 83.9
Sample A Male 91.8
Sample B Male 83.9
Sample C Female 85.3
Sample D Female 85.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 6.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 6.6
69837922 Antisense, RP_050224_01_B10, Mouse strain C57BL/6J (56 days, male) 6.6

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