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PHACTR3
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:82.4 nTPM
HPA:82.4 nTPM
GTEx:74.1 nTPM
FANTOM5:240.4 Scaled Tags Per Million
Pig:30.9 nTPM
Mouse:53.9 nTPM
Allen mouse:5.6 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 82.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 76.2
2586 Male, age 75, left hemisphere 83.2
2828 Female, age 72, unknown 81.0
2666 Male, age 74, left hemisphere 80.2
2019 Male, age 18, unknown 78.4
2219 Male, age 76, both hemispheres 78.0
1830 Male, age 51, unknown 75.4
1833 Male, age 53, unknown 73.7
1870 Female, age 42, unknown 72.6
1827 Male, age 72, unknown 70.7
2411 Female, age 72, unknown 68.7
Dorsal raphe nucleus
nTPM: 61.3
2750 Male, age 76, both hemispheres 71.0
2016 Female, age 72, unknown 65.0
1828 Male, age 53, unknown 62.6
2047 Male, age 72, unknown 55.1
2298 Female, age 72, unknown 52.8
Inferior colliculus
nTPM: 66.1
2849 Male, age 72, unknown 73.0
1848 Female, age 42, unknown 66.1
1890 Male, age 53, unknown 63.5
2097 Female, age 72, unknown 61.6
Median raphe nucleus
nTPM: 56.3
2220 Male, age 76, midline 56.3
Pedunculopontine tegmental nucleus
nTPM: 64.9
2334 Male, age 80, both hemispheres 67.8
1921 Female, age 85, both hemispheres 65.7
2338 Male, age 61, both hemispheres 61.2
Periaquaductal grey, anterior
nTPM: 62.9
2502 Female, age 75, unknown 65.4
1795 Male, age 51, unknown 64.8
1947 Male, age 18, unknown 58.4
Periaquaductal grey, dorsal
nTPM: 60.7
2464 Female, age 72, unknown 65.8
1831 Male, age 72, unknown 63.2
1840 Male, age 53, unknown 59.5
2850 Male, age 76, both hemispheres 54.2
Periaquaductal grey, lateral
nTPM: 61.3
2053 Male, age 18, unknown 65.8
2272 Male, age 74, both hemispheres 59.1
2140 Male, age 76, both hemispheres 59.0
Pretectal area
nTPM: 69.2
1815 Male, age 53, unknown 79.7
2316 Male, age 76, right hemisphere 79.5
1944 Female, age 72, unknown 72.9
2007 Male, age 72, unknown 72.6
1817 Female, age 42, unknown 71.1
2407 Male, age 75, both hemispheres 69.0
2667 Female, age 75, unknown 67.8
1816 Male, age 51, unknown 66.5
2825 Male, age 18, unknown 65.5
2224 Female, age 72, unknown 61.2
2273 Male, age 74, both hemispheres 55.6
Red nucleus
nTPM: 82.4
2823 Male, age 76, right hemisphere 95.1
2588 Male, age 74, left hemisphere 89.4
2503 Female, age 72, unknown 88.2
2785 Male, age 18, unknown 85.0
1865 Male, age 51, unknown 84.2
1904 Male, age 53, unknown 81.1
2769 Male, age 72, unknown 81.1
2227 Male, age 72, unknown 80.0
2725 Female, age 75, unknown 79.7
1954 Female, age 42, unknown 78.8
1821 Female, age 72, unknown 73.6
2584 Male, age 75, left hemisphere 73.0
Substantia nigra
nTPM: 68.6
2699 Male, age 18, unknown 75.0
2409 Female, age 72, unknown 70.6
2583 Male, age 75, right hemisphere 70.3
1889 Female, age 72, unknown 70.0
1851 Male, age 51, unknown 69.5
2665 Male, age 74, both hemispheres 68.8
2590 Female, age 75, unknown 67.8
1941 Male, age 53, unknown 67.3
1916 Female, age 42, unknown 64.8
2241 Male, age 72, unknown 62.1
Superior colliculus
nTPM: 74.5
1995 Male, age 72, unknown 83.5
1913 Female, age 42, unknown 82.7
1895 Male, age 76, right hemisphere 79.7
2668 Female, age 75, unknown 74.4
1796 Male, age 53, unknown 72.6
1839 Male, age 51, unknown 72.3
2587 Male, age 74, left hemisphere 72.2
2087 Female, age 72, unknown 70.6
2664 Male, age 75, both hemispheres 69.9
2261 Male, age 18, unknown 67.0
Ventral tegmental area
nTPM: 67.6
2223 Female, age 72, unknown 72.8
2410 Female, age 72, unknown 70.5
1942 Male, age 51, unknown 66.8
1915 Female, age 42, unknown 65.5
2218 Male, age 76, both hemispheres 65.4
2021 Male, age 53, unknown 64.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 74.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 74.1
Samples: 139

Max nTPM: 164.9
Min nTPM: 31.7
Std nTPM: 27.7
Median nTPM: 68.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 164.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 158.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 146.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 142.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 137.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 136.8
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 135.2
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 130.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 123.2
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 121.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 120.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 240.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 240.4
FF:10158-103A5 76 years, female 240.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 30.9
Pig sample Sample description nTPM
Midbrain
nTPM: 28.1
Samples: 4

Max nTPM: 39.9
Min nTPM: 22.2
Sample A Female 22.2
Sample B Female 27.2
Sample C Male 39.9
Sample D Male 23.2
Periaqueductal gray
nTPM: 21.1
Samples: 3

Max nTPM: 25.0
Min nTPM: 18.7
Sample B Female 25.0
Sample C Male 18.7
Sample D Male 19.5
Substantia nigra
nTPM: 27.4
Samples: 4

Max nTPM: 34.0
Min nTPM: 19.2
Sample A Female 26.2
Sample B Female 19.2
Sample C Male 30.0
Sample D Male 34.0
Superior colliculi
nTPM: 30.9
Samples: 4

Max nTPM: 47.6
Min nTPM: 19.6
Sample A Female 25.2
Sample B Female 19.6
Sample C Male 47.6
Sample D Male 31.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 53.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 53.9
Samples: 4

Max nTPM: 58.9
Min nTPM: 46.4
Sample A Male 54.4
Sample B Male 46.4
Sample C Female 58.9
Sample D Female 55.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.6
69837922 Antisense, RP_050224_01_B10, Mouse strain C57BL/6J (56 days, male) 5.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.