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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:34.3 nTPM
HPA:34.3 nTPM
GTEx:40.1 nTPM
FANTOM5:139.7 Scaled Tags Per Million
Pig:11.3 nTPM
Mouse:88.4 nTPM
Allen mouse:11.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 34.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 31.6
2411 Female, age 72, unknown 37.4
1870 Female, age 42, unknown 34.5
2019 Male, age 18, unknown 33.0
1830 Male, age 51, unknown 32.2
1827 Male, age 72, unknown 31.4
1833 Male, age 53, unknown 31.0
2586 Male, age 75, left hemisphere 30.6
2219 Male, age 76, both hemispheres 29.9
2828 Female, age 72, unknown 29.4
2666 Male, age 74, left hemisphere 26.3
Dorsal raphe nucleus
nTPM: 31.7
2750 Male, age 76, both hemispheres 36.8
2298 Female, age 72, unknown 32.7
2047 Male, age 72, unknown 30.5
1828 Male, age 53, unknown 29.3
2016 Female, age 72, unknown 29.3
Inferior colliculus
nTPM: 29.7
2097 Female, age 72, unknown 30.2
1848 Female, age 42, unknown 29.8
2849 Male, age 72, unknown 29.5
1890 Male, age 53, unknown 29.2
Median raphe nucleus
nTPM: 31.3
2220 Male, age 76, midline 31.3
Pedunculopontine tegmental nucleus
nTPM: 29.0
2334 Male, age 80, both hemispheres 31.0
1921 Female, age 85, both hemispheres 30.6
2338 Male, age 61, both hemispheres 25.3
Periaquaductal grey, anterior
nTPM: 30.2
1947 Male, age 18, unknown 31.4
2502 Female, age 75, unknown 30.1
1795 Male, age 51, unknown 29.0
Periaquaductal grey, dorsal
nTPM: 28.2
2464 Female, age 72, unknown 30.8
1840 Male, age 53, unknown 28.3
1831 Male, age 72, unknown 27.7
2850 Male, age 76, both hemispheres 26.2
Periaquaductal grey, lateral
nTPM: 29.4
2272 Male, age 74, both hemispheres 33.6
2053 Male, age 18, unknown 28.1
2140 Male, age 76, both hemispheres 26.4
Pretectal area
nTPM: 29.2
1815 Male, age 53, unknown 31.5
2825 Male, age 18, unknown 30.9
2007 Male, age 72, unknown 30.5
1817 Female, age 42, unknown 30.4
2273 Male, age 74, both hemispheres 30.1
2316 Male, age 76, right hemisphere 29.2
2224 Female, age 72, unknown 29.0
2667 Female, age 75, unknown 28.9
1816 Male, age 51, unknown 28.2
1944 Female, age 72, unknown 26.8
2407 Male, age 75, both hemispheres 25.9
Red nucleus
nTPM: 34.3
2503 Female, age 72, unknown 38.2
1865 Male, age 51, unknown 36.7
1821 Female, age 72, unknown 36.5
1904 Male, age 53, unknown 35.9
2769 Male, age 72, unknown 35.7
1954 Female, age 42, unknown 35.2
2227 Male, age 72, unknown 34.4
2785 Male, age 18, unknown 33.5
2588 Male, age 74, left hemisphere 33.2
2725 Female, age 75, unknown 32.2
2823 Male, age 76, right hemisphere 31.5
2584 Male, age 75, left hemisphere 28.0
Substantia nigra
nTPM: 31.4
2409 Female, age 72, unknown 36.6
1851 Male, age 51, unknown 33.5
2590 Female, age 75, unknown 32.9
2583 Male, age 75, right hemisphere 32.2
1889 Female, age 72, unknown 32.0
1916 Female, age 42, unknown 31.4
1941 Male, age 53, unknown 31.4
2241 Male, age 72, unknown 28.5
2699 Male, age 18, unknown 28.3
2665 Male, age 74, both hemispheres 27.1
Superior colliculus
nTPM: 30.4
1895 Male, age 76, right hemisphere 32.6
1913 Female, age 42, unknown 32.4
2587 Male, age 74, left hemisphere 32.0
1995 Male, age 72, unknown 31.8
1796 Male, age 53, unknown 31.1
2668 Female, age 75, unknown 30.7
2261 Male, age 18, unknown 30.3
1839 Male, age 51, unknown 30.0
2087 Female, age 72, unknown 28.1
2664 Male, age 75, both hemispheres 25.4
Ventral tegmental area
nTPM: 31.5
2410 Female, age 72, unknown 35.8
2223 Female, age 72, unknown 33.2
2218 Male, age 76, both hemispheres 31.2
1915 Female, age 42, unknown 30.3
2021 Male, age 53, unknown 29.4
1942 Male, age 51, unknown 29.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 40.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 40.1
Samples: 139

Max nTPM: 92.4
Min nTPM: 17.4
Std nTPM: 13.4
Median nTPM: 38.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 92.4
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 81.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 79.4
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 78.7
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 75.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 73.4
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 63.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 62.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 61.5
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 61.2
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 60.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 139.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 139.7
FF:10158-103A5 76 years, female 139.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 11.3
Pig sample Sample description nTPM
Midbrain
nTPM: 11.1
Samples: 4

Max nTPM: 13.1
Min nTPM: 9.8
Sample A Female 13.1
Sample B Female 9.8
Sample C Male 10.0
Sample D Male 11.6
Periaqueductal gray
nTPM: 10.5
Samples: 3

Max nTPM: 11.1
Min nTPM: 9.9
Sample B Female 11.1
Sample C Male 9.9
Sample D Male 10.4
Substantia nigra
nTPM: 11.4
Samples: 4

Max nTPM: 14.9
Min nTPM: 8.8
Sample A Female 14.9
Sample B Female 10.8
Sample C Male 10.9
Sample D Male 8.8
Superior colliculi
nTPM: 10.8
Samples: 4

Max nTPM: 14.4
Min nTPM: 9.2
Sample A Female 14.4
Sample B Female 10.1
Sample C Male 9.6
Sample D Male 9.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 88.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 88.4
Samples: 4

Max nTPM: 93.2
Min nTPM: 84.6
Sample A Male 88.4
Sample B Male 87.5
Sample C Female 84.6
Sample D Female 93.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 11.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.8
69838210 Antisense, RP_050224_02_D04, Mouse strain C57BL/6J (56 days, male) 11.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
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