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PCBP4
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:111.6 nTPM
HPA:111.6 nTPM
GTEx:70.7 nTPM
FANTOM5:121.8 Scaled Tags Per Million
Pig:64.8 nTPM
Mouse:74.1 nTPM
Allen mouse:13.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 111.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 67.8
2288 Male, age 75, left hemisphere 81.2
1781 Male, age 74, unknown 72.4
1854 Male, age 80, left hemisphere 69.1
2290 Female, age 72, unknown 65.5
2481 Female, age 94, left hemisphere 64.7
2289 Male, age 61, right hemisphere 64.6
2846 Female, age 79, unknown 64.3
1857 Female, age 85, left hemisphere 60.9
Claustrum
nTPM: 88.0
2292 Female, age 85, both hemispheres 111.1
1956 Male, age 74, unknown 97.5
2491 Male, age 75, both hemispheres 88.0
2284 Female, age 91, both hemispheres 87.5
2568 Male, age 61, both hemispheres 86.2
2645 Female, age 72, unknown 83.2
2198 Male, age 80, both hemispheres 82.0
2196 Female, age 79, unknown 78.5
2392 Female, age 94, both hemispheres 78.4
Globus pallidus, externus
nTPM: 108.6
2567 Female, age 72, unknown 119.0
1996 Male, age 80, right hemisphere 114.4
2646 Male, age 61, right hemisphere 110.6
2772 Female, age 79, unknown 103.3
2395 Male, age 75, both hemispheres 95.5
Globus pallidus, internus
nTPM: 111.6
2111 Female, age 85, right hemisphere 139.9
2566 Female, age 72, unknown 124.3
2778 Female, age 91, both hemispheres 115.5
1818 Male, age 74, unknown 112.3
2037 Male, age 80, right hemisphere 107.3
2287 Male, age 75, right hemisphere 103.7
2483 Female, age 94, right hemisphere 78.1
Nucleus accumbens
nTPM: 74.6
2732 Male, age 80, right hemisphere 87.2
2391 Female, age 94, left hemisphere 84.3
2286 Male, age 75, left hemisphere 80.5
2698 Female, age 72, unknown 79.4
1806 Female, age 85, left hemisphere 70.1
1783 Male, age 74, unknown 68.5
2824 Male, age 61, right hemisphere 65.5
1856 Female, age 91, right hemisphere 61.4
Nucleus basalis of Meynert
nTPM: 80.2
2569 Male, age 61, both hemispheres 104.7
2821 Male, age 75, both hemispheres 80.1
2393 Male, age 80, right hemisphere 70.3
2484 Female, age 94, left hemisphere 65.5
Nucleus of the diagonal band
nTPM: 72.5
2029 Male, age 61, right hemisphere 81.2
1812 Female, age 91, both hemispheres 71.0
2195 Female, age 85, both hemispheres 70.5
2775 Male, age 80, right hemisphere 70.3
1979 Male, age 74, unknown 69.4
Olfactory tubercle
nTPM: 76.6
2856 Male, age 75, right hemisphere 79.5
2487 Female, age 94, left hemisphere 79.1
1998 Female, age 91, both hemispheres 76.0
1846 Male, age 80, right hemisphere 71.9
Putamen
nTPM: 71.1
2647 Male, age 75, left hemisphere 89.5
1829 Male, age 74, unknown 75.0
2489 Female, age 72, unknown 75.0
2482 Female, age 94, left hemisphere 68.8
1937 Female, age 91, right hemisphere 68.1
2466 Female, age 79, unknown 63.7
1838 Male, age 80, right hemisphere 57.6
Septal nuclei
nTPM: 76.3
2394 Male, age 61, left hemisphere 94.2
2059 Female, age 85, both hemispheres 80.2
2629 Female, age 94, right hemisphere 79.0
2199 Male, age 80, right hemisphere 77.3
2009 Female, age 91, both hemispheres 70.7
2031 Female, age 72, unknown 67.0
1960 Male, age 74, unknown 65.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 70.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 58.8
Samples: 246

Max nTPM: 142.4
Min nTPM: 18.0
Std nTPM: 19.2
Median nTPM: 57.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 142.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 117.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 116.2
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 112.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 107.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 106.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 102.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 100.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 100.3
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 100.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 97.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 52.1
Samples: 246

Max nTPM: 139.5
Min nTPM: 18.0
Std nTPM: 22.0
Median nTPM: 45.5
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 139.5
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 138.1
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 129.3
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 127.1
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 118.4
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 116.7
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 115.6
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 114.6
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 113.4
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 106.7
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 101.9
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Brain - Putamen (basal ganglia)
Average nTPM: 70.7
Samples: 205

Max nTPM: 187.4
Min nTPM: 34.7
Std nTPM: 21.6
Median nTPM: 67.1
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 187.4
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 138.4
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 136.0
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 132.6
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 121.8
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 117.9
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 113.8
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 112.7
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 111.1
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 108.9
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 108.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 121.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 58.3
FF:10164-103B2 76 years, female 58.3
Globus pallidus
Scaled Tags Per Million: 121.8
FF:10161-103A8 76 years, female 132.4
FF:10175-103C4 60 years, female 111.3
Nucleus accumbens
Scaled Tags Per Million: 81.7
FF:10037-101F1 23-56 years, mixed 81.7
Putamen
Scaled Tags Per Million: 55.0
FF:10176-103C5 60 years, female 55.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 64.8
Pig sample Sample description nTPM
Caudate
nTPM: 31.8
Samples: 4

Max nTPM: 33.6
Min nTPM: 30.6
Sample A Female 31.1
Sample B Female 30.6
Sample C Male 33.6
Sample D Male 31.7
Putamen
nTPM: 64.8
Samples: 4

Max nTPM: 101.6
Min nTPM: 35.7
Sample A Female 101.6
Sample B Female 35.7
Sample C Male 46.8
Sample D Male 74.9
Septum
nTPM: 45.9
Samples: 4

Max nTPM: 50.4
Min nTPM: 35.9
Sample A Female 48.5
Sample B Female 35.9
Sample C Male 50.4
Sample D Male 48.6
Ventral pallidum
nTPM: 61.7
Samples: 4

Max nTPM: 87.8
Min nTPM: 28.8
Sample A Female 28.8
Sample B Female 52.1
Sample C Male 87.8
Sample D Male 78.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 74.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 74.1
Samples: 4

Max nTPM: 85.6
Min nTPM: 67.0
Sample A Male 72.5
Sample B Male 85.6
Sample C Female 67.0
Sample D Female 71.2
Septum
nTPM: 68.6
Samples: 4

Max nTPM: 74.3
Min nTPM: 64.0
Sample A Male 74.3
Sample B Male 64.0
Sample C Female 68.3
Sample D Female 67.7
Ventral forebrain
nTPM: 73.9
Samples: 4

Max nTPM: 81.1
Min nTPM: 66.4
Sample A Male 81.1
Sample B Male 66.4
Sample C Female 76.4
Sample D Female 71.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 13.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 9.0
67936208 Antisense, RP_040928_01_A08, Mouse strain C57BL/6J (56 days, male) 9.0
68196977 Antisense, RP_040928_01_A08, Mouse strain C57BL/6J (56 days, male) 3.0
Pallidum
Expression energy: 13.1
67936208 Antisense, RP_040928_01_A08, Mouse strain C57BL/6J (56 days, male) 13.1
68196977 Antisense, RP_040928_01_A08, Mouse strain C57BL/6J (56 days, male) 5.0

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.