ABOUTMENU
HELP
NEWS
TXNL1
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
Mouse brain, Intensity
Hippocampal formationi 		73.064
RNA expressioni
Consensus:50.0 nTPM
HPA:50.0 nTPM
GTEx:46.9 nTPM
FANTOM5:137.7 Scaled Tags Per Million
Pig:54.8 nTPM
Mouse:103.4 nTPM
Allen mouse:8.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA002828Antibody HPA002829Antibody CAB016446
Glial cells MediumNot detectedHigh
Neuronal cells MediumMediumHigh







HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody HPA002828
Hippocampal formation mean intensity 73.064
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 58.428
Molecular layer of the dentate gyrus 53.246
Granular dentate gyrus 71.973
CA1 - oriens layer 37.497
CA1 - pyramidal layer 64.760
CA1 - radiatum layer 47.806
CA2 - oriens layer 29.355
CA2 - pyramidal layer 54.141
CA2 - radiatum layer 36.659
CA3 - oriens layer 33.879
CA3 - pyramidal layer 61.448
CA3 - radiatum layer 36.170
Stratum lucidum 45.273
Lacunosum moleculare 56.188
Subiculum 48.369

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 50.0
Sample id Sample description nTPM
Hippocampus
nTPM: 45.8
1898 Male, age 80, left hemisphere 53.7
1855 Male, age 76, left hemisphere 47.0
1911 Female, age 85, right hemisphere 45.2
2621 Female, age 67, right hemisphere 44.2
2148 Female, age 91, left hemisphere 42.6
2529 Female, age 94, left hemisphere 41.8
Dentate gyrus
nTPM: 45.7
1927 Female, age 91, both hemispheres 52.4
2010 Male, age 76, both hemispheres 51.6
2246 Female, age 85, both hemispheres 45.7
2530 Female, age 94, left hemisphere 43.7
2528 Male, age 74, both hemispheres 41.3
2531 Female, age 67, both hemispheres 39.7
Entorhinal gyrus
nTPM: 43.2
1938 Female, age 85, left hemisphere 46.9
1787 Male, age 76, left hemisphere 44.1
2764 Male, age 80, right hemisphere 43.7
2117 Female, age 91, right hemisphere 42.4
2686 Male, age 75, right hemisphere 41.1
2613 Female, age 94, left hemisphere 41.0
Hippocampus, CA1
nTPM: 48.7
2749 Male, age 80, left hemisphere 57.9
1873 Female, age 85, both hemispheres 50.9
2045 Male, age 76, both hemispheres 50.2
2527 Male, age 74, both hemispheres 43.5
2082 Female, age 91, right hemisphere 41.0
Hippocampus, CA2
nTPM: 48.3
1892 Male, age 76, both hemispheres 56.2
1963 Male, age 80, left hemisphere 50.9
2437 Female, age 94, left hemisphere 48.7
1940 Female, age 85, left hemisphere 47.0
2249 Male, age 74, both hemispheres 43.7
2113 Female, age 91, right hemisphere 43.4
Hippocampus, CA3
nTPM: 45.9
2137 Male, age 80, left hemisphere 53.3
1867 Male, age 76, both hemispheres 52.5
1891 Female, age 85, both hemispheres 46.0
2436 Male, age 74, both hemispheres 45.5
2620 Female, age 94, left hemisphere 41.5
2861 Female, age 67, both hemispheres 36.8
Parahippocampal cortex
nTPM: 45.5
1850 Male, age 80, both hemispheres 53.2
1990 Female, age 91, right hemisphere 47.3
1933 Female, age 85, both hemispheres 46.8
2018 Male, age 76, both hemispheres 46.5
2693 Female, age 94, both hemispheres 45.7
2250 Female, age 67, right hemisphere 45.6
2245 Female, age 91, both hemispheres 43.6
2532 Female, age 72, left hemisphere 42.5
2692 Male, age 74, both hemispheres 42.1
2622 Female, age 67, right hemisphere 41.4
Perirhinal gyrus
nTPM: 50.0
1847 Female, age 91, left hemisphere 53.1
1794 Male, age 80, right hemisphere 51.9
1841 Female, age 85, right hemisphere 51.0
2521 Female, age 94, right hemisphere 48.5
2848 Male, age 76, right hemisphere 45.5
Subiculum
nTPM: 45.6
1901 Male, age 80, both hemispheres 49.9
2438 Female, age 94, left hemisphere 49.2
2042 Male, age 76, both hemispheres 47.1
1977 Female, age 85, both hemispheres 45.5
2729 Female, age 91, right hemisphere 41.4
2619 Male, age 74, both hemispheres 40.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 46.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 46.9
Samples: 197

Max nTPM: 98.6
Min nTPM: 26.3
Std nTPM: 13.2
Median nTPM: 43.9
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 98.6
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 96.4
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 90.2
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 80.9
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 76.9
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 75.2
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 75.1
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 74.7
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 69.8
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 69.8
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 69.6
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 137.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 137.7
FF:10169-103B7 60 years, female 168.4
FF:10153-102I9 76 years, female 107.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 54.8
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 54.8
Samples: 4

Max nTPM: 65.2
Min nTPM: 46.0
Sample A Female 65.2
Sample B Female 54.4
Sample C Male 53.6
Sample D Male 46.0
Entorhinal cortex
nTPM: 49.7
Samples: 4

Max nTPM: 56.4
Min nTPM: 43.2
Sample A Female 51.8
Sample B Female 56.4
Sample C Male 47.5
Sample D Male 43.2
Subiculum
nTPM: 51.8
Samples: 4

Max nTPM: 62.9
Min nTPM: 47.3
Sample A Female 62.9
Sample B Female 47.3
Sample C Male 47.7
Sample D Male 49.1
Ventral hippocampus
nTPM: 49.5
Samples: 4

Max nTPM: 55.5
Min nTPM: 43.0
Sample A Female 52.0
Sample B Female 43.0
Sample C Male 47.4
Sample D Male 55.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 103.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 98.0
Samples: 4

Max nTPM: 101.8
Min nTPM: 91.2
Sample A Male 91.2
Sample B Male 101.0
Sample C Female 101.8
Sample D Female 98.0
Hippocampal formation
nTPM: 103.4
Samples: 4

Max nTPM: 122.7
Min nTPM: 94.2
Sample A Male 122.7
Sample B Male 101.7
Sample C Female 95.0
Sample D Female 94.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 8.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 8.6
69117056 Antisense, RP_050321_01_F09, Mouse strain C57BL/6J (56 days, male) 8.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.