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SUPT16H
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:9.7 nTPM
HPA:9.7 nTPM
GTEx:10.2 nTPM
FANTOM5:34.1 Scaled Tags Per Million
Pig:30.4 nTPM
Mouse:22.7 nTPM
Allen mouse:5.9 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA049787Antibody CAB022551
Glial cells Not detectedNot detected
Neuronal cells MediumHigh




HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 9.7
Sample id Sample description nTPM
Hippocampus
nTPM: 7.7
1898 Male, age 80, left hemisphere 9.5
2621 Female, age 67, right hemisphere 9.2
2529 Female, age 94, left hemisphere 8.2
2148 Female, age 91, left hemisphere 7.6
1911 Female, age 85, right hemisphere 6.0
1855 Male, age 76, left hemisphere 5.8
Dentate gyrus
nTPM: 8.1
1927 Female, age 91, both hemispheres 8.9
2530 Female, age 94, left hemisphere 8.6
2531 Female, age 67, both hemispheres 8.3
2010 Male, age 76, both hemispheres 8.2
2246 Female, age 85, both hemispheres 7.3
2528 Male, age 74, both hemispheres 7.3
Entorhinal gyrus
nTPM: 8.7
2686 Male, age 75, right hemisphere 9.9
1787 Male, age 76, left hemisphere 9.1
1938 Female, age 85, left hemisphere 9.1
2764 Male, age 80, right hemisphere 8.9
2117 Female, age 91, right hemisphere 7.9
2613 Female, age 94, left hemisphere 7.4
Hippocampus, CA1
nTPM: 8.4
2749 Male, age 80, left hemisphere 10.2
2045 Male, age 76, both hemispheres 8.8
1873 Female, age 85, both hemispheres 8.6
2527 Male, age 74, both hemispheres 8.1
2082 Female, age 91, right hemisphere 6.2
Hippocampus, CA2
nTPM: 8.3
1892 Male, age 76, both hemispheres 13.4
1963 Male, age 80, left hemisphere 8.8
2113 Female, age 91, right hemisphere 7.3
2249 Male, age 74, both hemispheres 7.2
2437 Female, age 94, left hemisphere 7.2
1940 Female, age 85, left hemisphere 6.0
Hippocampus, CA3
nTPM: 8.1
1867 Male, age 76, both hemispheres 9.7
2137 Male, age 80, left hemisphere 9.3
1891 Female, age 85, both hemispheres 8.4
2620 Female, age 94, left hemisphere 7.3
2861 Female, age 67, both hemispheres 7.2
2436 Male, age 74, both hemispheres 7.0
Parahippocampal cortex
nTPM: 8.5
1850 Male, age 80, both hemispheres 10.8
2532 Female, age 72, left hemisphere 9.4
1990 Female, age 91, right hemisphere 9.2
2622 Female, age 67, right hemisphere 8.6
2692 Male, age 74, both hemispheres 8.5
2245 Female, age 91, both hemispheres 8.0
1933 Female, age 85, both hemispheres 7.8
2693 Female, age 94, both hemispheres 7.7
2018 Male, age 76, both hemispheres 7.5
2250 Female, age 67, right hemisphere 7.5
Perirhinal gyrus
nTPM: 9.7
1841 Female, age 85, right hemisphere 11.2
2848 Male, age 76, right hemisphere 10.6
1794 Male, age 80, right hemisphere 10.2
1847 Female, age 91, left hemisphere 8.9
2521 Female, age 94, right hemisphere 7.7
Subiculum
nTPM: 8.3
2438 Female, age 94, left hemisphere 11.1
1977 Female, age 85, both hemispheres 9.4
2619 Male, age 74, both hemispheres 9.2
1901 Male, age 80, both hemispheres 8.4
2042 Male, age 76, both hemispheres 6.0
2729 Female, age 91, right hemisphere 5.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 10.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 10.2
Samples: 197

Max nTPM: 18.0
Min nTPM: 4.3
Std nTPM: 2.9
Median nTPM: 10.0
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 18.0
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 17.4
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 17.1
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 16.7
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 16.6
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 16.4
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 15.4
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 15.2
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 15.2
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 15.1
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 15.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 34.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 34.1
FF:10153-102I9 76 years, female 36.9
FF:10169-103B7 60 years, female 31.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 30.4
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 30.4
Samples: 4

Max nTPM: 34.4
Min nTPM: 24.1
Sample A Female 34.4
Sample B Female 30.9
Sample C Male 32.2
Sample D Male 24.1
Entorhinal cortex
nTPM: 29.1
Samples: 4

Max nTPM: 31.7
Min nTPM: 25.5
Sample A Female 31.7
Sample B Female 29.6
Sample C Male 29.6
Sample D Male 25.5
Subiculum
nTPM: 30.1
Samples: 4

Max nTPM: 39.3
Min nTPM: 25.0
Sample A Female 39.3
Sample B Female 27.7
Sample C Male 28.3
Sample D Male 25.0
Ventral hippocampus
nTPM: 28.2
Samples: 4

Max nTPM: 30.5
Min nTPM: 24.0
Sample A Female 30.5
Sample B Female 24.0
Sample C Male 28.6
Sample D Male 29.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 22.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 22.7
Samples: 4

Max nTPM: 24.6
Min nTPM: 21.1
Sample A Male 22.5
Sample B Male 22.5
Sample C Female 21.1
Sample D Female 24.6
Hippocampal formation
nTPM: 21.5
Samples: 4

Max nTPM: 23.3
Min nTPM: 20.4
Sample A Male 20.6
Sample B Male 23.3
Sample C Female 21.6
Sample D Female 20.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 5.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 5.9
69838741 Antisense, RP_050321_03_D10, Mouse strain C57BL/6J (56 days, male) 5.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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