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ECHDC1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:24.7 nTPM
HPA:24.7 nTPM
GTEx:32.4 nTPM
FANTOM5:41.6 Scaled Tags Per Million
Pig:20.3 nTPM
Mouse:45.4 nTPM
Allen mouse:0.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 24.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.4
1870 Female, age 42, unknown 27.3
1833 Male, age 53, unknown 25.0
1827 Male, age 72, unknown 24.9
2411 Female, age 72, unknown 24.8
1830 Male, age 51, unknown 24.2
2019 Male, age 18, unknown 23.7
2828 Female, age 72, unknown 23.6
2666 Male, age 74, left hemisphere 21.5
2219 Male, age 76, both hemispheres 20.4
2586 Male, age 75, left hemisphere 18.5
Dorsal raphe nucleus
nTPM: 23.5
2750 Male, age 76, both hemispheres 26.3
2016 Female, age 72, unknown 24.5
1828 Male, age 53, unknown 23.4
2047 Male, age 72, unknown 22.3
2298 Female, age 72, unknown 20.9
Inferior colliculus
nTPM: 24.1
2097 Female, age 72, unknown 25.4
1890 Male, age 53, unknown 24.8
1848 Female, age 42, unknown 23.8
2849 Male, age 72, unknown 22.3
Median raphe nucleus
nTPM: 22.3
2220 Male, age 76, midline 22.3
Pedunculopontine tegmental nucleus
nTPM: 24.4
2338 Male, age 61, both hemispheres 25.7
2334 Male, age 80, both hemispheres 24.2
1921 Female, age 85, both hemispheres 23.5
Periaquaductal grey, anterior
nTPM: 22.5
1947 Male, age 18, unknown 24.7
2502 Female, age 75, unknown 22.6
1795 Male, age 51, unknown 20.1
Periaquaductal grey, dorsal
nTPM: 21.8
2464 Female, age 72, unknown 22.4
1831 Male, age 72, unknown 22.2
2850 Male, age 76, both hemispheres 21.6
1840 Male, age 53, unknown 21.1
Periaquaductal grey, lateral
nTPM: 22.1
2053 Male, age 18, unknown 23.1
2140 Male, age 76, both hemispheres 22.1
2272 Male, age 74, both hemispheres 21.1
Pretectal area
nTPM: 22.3
2667 Female, age 75, unknown 24.3
2273 Male, age 74, both hemispheres 23.4
2316 Male, age 76, right hemisphere 22.9
2224 Female, age 72, unknown 22.8
2825 Male, age 18, unknown 22.5
1944 Female, age 72, unknown 22.2
2407 Male, age 75, both hemispheres 22.2
1817 Female, age 42, unknown 21.9
1815 Male, age 53, unknown 21.5
1816 Male, age 51, unknown 20.7
2007 Male, age 72, unknown 20.5
Red nucleus
nTPM: 24.7
1954 Female, age 42, unknown 28.0
2823 Male, age 76, right hemisphere 27.0
1865 Male, age 51, unknown 26.7
1821 Female, age 72, unknown 25.8
1904 Male, age 53, unknown 25.3
2769 Male, age 72, unknown 25.1
2227 Male, age 72, unknown 24.9
2725 Female, age 75, unknown 24.0
2503 Female, age 72, unknown 23.8
2584 Male, age 75, left hemisphere 22.8
2588 Male, age 74, left hemisphere 21.9
2785 Male, age 18, unknown 21.3
Substantia nigra
nTPM: 22.4
2241 Male, age 72, unknown 24.2
1889 Female, age 72, unknown 23.6
2590 Female, age 75, unknown 23.0
1851 Male, age 51, unknown 22.6
2583 Male, age 75, right hemisphere 22.4
2409 Female, age 72, unknown 22.2
2699 Male, age 18, unknown 22.2
1916 Female, age 42, unknown 22.0
1941 Male, age 53, unknown 21.2
2665 Male, age 74, both hemispheres 20.5
Superior colliculus
nTPM: 22.8
1895 Male, age 76, right hemisphere 25.1
1839 Male, age 51, unknown 24.5
1913 Female, age 42, unknown 23.9
2587 Male, age 74, left hemisphere 23.5
1995 Male, age 72, unknown 23.0
2087 Female, age 72, unknown 22.6
2261 Male, age 18, unknown 22.3
1796 Male, age 53, unknown 21.8
2664 Male, age 75, both hemispheres 20.9
2668 Female, age 75, unknown 20.6
Ventral tegmental area
nTPM: 22.4
2223 Female, age 72, unknown 23.9
2021 Male, age 53, unknown 23.1
2218 Male, age 76, both hemispheres 22.2
1915 Female, age 42, unknown 21.9
1942 Male, age 51, unknown 21.9
2410 Female, age 72, unknown 21.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 32.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 32.4
Samples: 139

Max nTPM: 53.2
Min nTPM: 17.7
Std nTPM: 6.7
Median nTPM: 31.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 53.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 52.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 52.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 49.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 49.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 47.8
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 47.4
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 44.7
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 44.5
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 44.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 42.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 41.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 41.6
FF:10158-103A5 76 years, female 41.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 20.3
Pig sample Sample description nTPM
Midbrain
nTPM: 20.3
Samples: 4

Max nTPM: 39.0
Min nTPM: 9.4
Sample A Female 39.0
Sample B Female 20.0
Sample C Male 12.8
Sample D Male 9.4
Periaqueductal gray
nTPM: 12.3
Samples: 3

Max nTPM: 18.4
Min nTPM: 8.6
Sample B Female 18.4
Sample C Male 10.0
Sample D Male 8.6
Substantia nigra
nTPM: 15.5
Samples: 4

Max nTPM: 22.5
Min nTPM: 10.4
Sample A Female 22.5
Sample B Female 17.5
Sample C Male 10.4
Sample D Male 11.7
Superior colliculi
nTPM: 17.2
Samples: 4

Max nTPM: 23.0
Min nTPM: 10.9
Sample A Female 23.0
Sample B Female 21.4
Sample C Male 13.5
Sample D Male 10.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 45.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 45.4
Samples: 4

Max nTPM: 46.6
Min nTPM: 44.5
Sample A Male 45.7
Sample B Male 44.5
Sample C Female 46.6
Sample D Female 44.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
69838747 Antisense, RP_050321_03_H07, Mouse strain C57BL/6J (56 days, male) 0.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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