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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.2 nTPM
HPA:17.2 nTPM
GTEx:28.1 nTPM
FANTOM5:27.0 Scaled Tags Per Million
Pig:96.7 nTPM
Mouse:10.7 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 17.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 12.6
2411 Female, age 72, unknown 13.6
2666 Male, age 74, left hemisphere 13.6
1827 Male, age 72, unknown 13.5
2219 Male, age 76, both hemispheres 13.2
2019 Male, age 18, unknown 12.8
2586 Male, age 75, left hemisphere 12.6
1833 Male, age 53, unknown 12.3
2828 Female, age 72, unknown 12.2
1870 Female, age 42, unknown 11.7
1830 Male, age 51, unknown 10.5
Dorsal raphe nucleus
nTPM: 13.3
2298 Female, age 72, unknown 15.4
2047 Male, age 72, unknown 14.7
1828 Male, age 53, unknown 12.9
2750 Male, age 76, both hemispheres 12.6
2016 Female, age 72, unknown 10.7
Inferior colliculus
nTPM: 12.9
2097 Female, age 72, unknown 14.9
1890 Male, age 53, unknown 13.0
2849 Male, age 72, unknown 12.2
1848 Female, age 42, unknown 11.5
Median raphe nucleus
nTPM: 15.0
2220 Male, age 76, midline 15.0
Pedunculopontine tegmental nucleus
nTPM: 14.9
2334 Male, age 80, both hemispheres 15.6
2338 Male, age 61, both hemispheres 15.5
1921 Female, age 85, both hemispheres 13.6
Periaquaductal grey, anterior
nTPM: 13.3
1795 Male, age 51, unknown 13.6
1947 Male, age 18, unknown 13.2
2502 Female, age 75, unknown 13.0
Periaquaductal grey, dorsal
nTPM: 13.0
1840 Male, age 53, unknown 14.8
1831 Male, age 72, unknown 13.2
2464 Female, age 72, unknown 12.3
2850 Male, age 76, both hemispheres 11.6
Periaquaductal grey, lateral
nTPM: 12.6
2272 Male, age 74, both hemispheres 13.7
2053 Male, age 18, unknown 12.7
2140 Male, age 76, both hemispheres 11.4
Pretectal area
nTPM: 16.5
1816 Male, age 51, unknown 24.9
1944 Female, age 72, unknown 23.4
1817 Female, age 42, unknown 20.8
1815 Male, age 53, unknown 19.0
2007 Male, age 72, unknown 18.1
2224 Female, age 72, unknown 13.9
2667 Female, age 75, unknown 13.6
2825 Male, age 18, unknown 12.5
2273 Male, age 74, both hemispheres 12.4
2407 Male, age 75, both hemispheres 11.9
2316 Male, age 76, right hemisphere 11.2
Red nucleus
nTPM: 11.7
2725 Female, age 75, unknown 17.0
2584 Male, age 75, left hemisphere 14.5
2785 Male, age 18, unknown 12.7
1821 Female, age 72, unknown 11.9
2503 Female, age 72, unknown 11.8
2588 Male, age 74, left hemisphere 11.5
2823 Male, age 76, right hemisphere 10.9
2769 Male, age 72, unknown 10.6
1865 Male, age 51, unknown 10.3
1904 Male, age 53, unknown 10.2
2227 Male, age 72, unknown 9.8
1954 Female, age 42, unknown 9.0
Substantia nigra
nTPM: 17.2
1916 Female, age 42, unknown 19.9
2409 Female, age 72, unknown 19.3
1889 Female, age 72, unknown 18.9
1851 Male, age 51, unknown 18.3
2241 Male, age 72, unknown 17.5
2665 Male, age 74, both hemispheres 17.0
1941 Male, age 53, unknown 16.8
2590 Female, age 75, unknown 15.1
2699 Male, age 18, unknown 15.0
2583 Male, age 75, right hemisphere 13.6
Superior colliculus
nTPM: 14.8
2087 Female, age 72, unknown 21.3
2261 Male, age 18, unknown 18.1
1913 Female, age 42, unknown 17.0
2587 Male, age 74, left hemisphere 14.3
1796 Male, age 53, unknown 14.0
1995 Male, age 72, unknown 13.6
2668 Female, age 75, unknown 13.0
2664 Male, age 75, both hemispheres 12.5
1895 Male, age 76, right hemisphere 12.4
1839 Male, age 51, unknown 12.1
Ventral tegmental area
nTPM: 14.9
2410 Female, age 72, unknown 17.5
1915 Female, age 42, unknown 16.3
2218 Male, age 76, both hemispheres 16.2
1942 Male, age 51, unknown 14.2
2021 Male, age 53, unknown 13.0
2223 Female, age 72, unknown 11.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 28.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 28.1
Samples: 139

Max nTPM: 68.7
Min nTPM: 11.9
Std nTPM: 10.9
Median nTPM: 25.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 68.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 62.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 59.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 53.1
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 52.9
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 52.3
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 50.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 49.3
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 49.2
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 48.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 48.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 27.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 27.0
FF:10158-103A5 76 years, female 27.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 96.7
Pig sample Sample description nTPM
Midbrain
nTPM: 96.7
Samples: 4

Max nTPM: 172.8
Min nTPM: 51.2
Sample A Female 172.8
Sample B Female 102.2
Sample C Male 60.5
Sample D Male 51.2
Periaqueductal gray
nTPM: 76.5
Samples: 3

Max nTPM: 81.7
Min nTPM: 67.2
Sample B Female 81.7
Sample C Male 80.6
Sample D Male 67.2
Substantia nigra
nTPM: 91.3
Samples: 4

Max nTPM: 112.7
Min nTPM: 78.1
Sample A Female 112.7
Sample B Female 78.1
Sample C Male 81.0
Sample D Male 93.4
Superior colliculi
nTPM: 81.9
Samples: 4

Max nTPM: 101.4
Min nTPM: 63.8
Sample A Female 101.4
Sample B Female 63.8
Sample C Male 87.1
Sample D Male 75.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 10.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 10.7
Samples: 4

Max nTPM: 11.6
Min nTPM: 9.6
Sample A Male 11.6
Sample B Male 9.6
Sample C Female 10.1
Sample D Female 11.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
67979040 Antisense, RP_040923_02_B12, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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