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CIRBP
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:176.2 nTPM
HPA:176.2 nTPM
GTEx:268.1 nTPM
FANTOM5:423.9 Scaled Tags Per Million
Mouse:104.8 nTPM
Allen mouse:3.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 176.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 143.5
2288 Male, age 75, left hemisphere 153.6
2290 Female, age 72, unknown 149.6
2481 Female, age 94, left hemisphere 145.8
2846 Female, age 79, unknown 144.4
1857 Female, age 85, left hemisphere 142.6
1854 Male, age 80, left hemisphere 141.6
1781 Male, age 74, unknown 140.1
2289 Male, age 61, right hemisphere 130.6
Claustrum
nTPM: 156.4
2292 Female, age 85, both hemispheres 164.8
2491 Male, age 75, both hemispheres 162.2
2198 Male, age 80, both hemispheres 159.4
2568 Male, age 61, both hemispheres 157.1
1956 Male, age 74, unknown 155.8
2645 Female, age 72, unknown 153.5
2284 Female, age 91, both hemispheres 152.9
2196 Female, age 79, unknown 151.2
2392 Female, age 94, both hemispheres 150.3
Globus pallidus, externus
nTPM: 176.2
2567 Female, age 72, unknown 209.7
2395 Male, age 75, both hemispheres 171.9
2646 Male, age 61, right hemisphere 171.0
2772 Female, age 79, unknown 168.1
1996 Male, age 80, right hemisphere 160.4
Globus pallidus, internus
nTPM: 172.4
2566 Female, age 72, unknown 193.3
2287 Male, age 75, right hemisphere 187.9
2111 Female, age 85, right hemisphere 170.3
2778 Female, age 91, both hemispheres 170.0
1818 Male, age 74, unknown 167.9
2483 Female, age 94, right hemisphere 159.3
2037 Male, age 80, right hemisphere 158.4
Nucleus accumbens
nTPM: 150.5
2732 Male, age 80, right hemisphere 164.8
2698 Female, age 72, unknown 158.1
2286 Male, age 75, left hemisphere 151.8
1783 Male, age 74, unknown 150.9
1856 Female, age 91, right hemisphere 146.8
1806 Female, age 85, left hemisphere 144.8
2391 Female, age 94, left hemisphere 143.9
2824 Male, age 61, right hemisphere 143.3
Nucleus basalis of Meynert
nTPM: 153.3
2569 Male, age 61, both hemispheres 162.1
2393 Male, age 80, right hemisphere 154.7
2821 Male, age 75, both hemispheres 152.7
2484 Female, age 94, left hemisphere 143.6
Nucleus of the diagonal band
nTPM: 163.7
2775 Male, age 80, right hemisphere 172.2
1979 Male, age 74, unknown 171.6
2029 Male, age 61, right hemisphere 161.1
1812 Female, age 91, both hemispheres 158.0
2195 Female, age 85, both hemispheres 155.4
Olfactory tubercle
nTPM: 158.3
1846 Male, age 80, right hemisphere 164.9
1998 Female, age 91, both hemispheres 164.3
2856 Male, age 75, right hemisphere 152.8
2487 Female, age 94, left hemisphere 151.4
Putamen
nTPM: 147.0
2647 Male, age 75, left hemisphere 158.5
2489 Female, age 72, unknown 148.4
1937 Female, age 91, right hemisphere 147.4
2466 Female, age 79, unknown 145.6
1829 Male, age 74, unknown 144.9
2482 Female, age 94, left hemisphere 144.9
1838 Male, age 80, right hemisphere 139.2
Septal nuclei
nTPM: 157.5
2059 Female, age 85, both hemispheres 168.3
2199 Male, age 80, right hemisphere 163.5
2031 Female, age 72, unknown 162.4
2394 Male, age 61, left hemisphere 156.7
1960 Male, age 74, unknown 155.8
2009 Female, age 91, both hemispheres 149.0
2629 Female, age 94, right hemisphere 146.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 268.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 235.8
Samples: 246

Max nTPM: 429.7
Min nTPM: 46.4
Std nTPM: 72.3
Median nTPM: 239.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 429.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 402.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 402.5
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 388.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 386.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 378.8
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 374.0
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 373.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 368.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 365.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 357.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 268.1
Samples: 246

Max nTPM: 541.8
Min nTPM: 47.9
Std nTPM: 86.4
Median nTPM: 266.5
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 541.8
GTEX-1H1ZS-0011-R6b-SM-A9G1F 70-79 years, male 528.4
GTEX-15CHQ-0011-R6b-SM-69LOX 60-69 years, male 477.7
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 472.1
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 464.3
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 461.7
GTEX-1GTWX-0011-R6a-SM-A96RN 60-69 years, male 448.1
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 421.5
GTEX-139TT-0011-R6b-SM-5J2ON 60-69 years, male 419.9
GTEX-14PJM-0011-R6a-SM-6872G 50-59 years, female 417.1
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 417.0
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Brain - Putamen (basal ganglia)
Average nTPM: 246.5
Samples: 205

Max nTPM: 461.5
Min nTPM: 52.7
Std nTPM: 72.8
Median nTPM: 243.6
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 461.5
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 438.7
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 417.3
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 412.7
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 411.8
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 406.4
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 387.0
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 372.5
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 370.3
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 369.9
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 366.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 423.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 308.8
FF:10164-103B2 76 years, female 308.8
Globus pallidus
Scaled Tags Per Million: 382.4
FF:10175-103C4 60 years, female 518.6
FF:10161-103A8 76 years, female 246.2
Nucleus accumbens
Scaled Tags Per Million: 423.9
FF:10037-101F1 23-56 years, mixed 423.9
Putamen
Scaled Tags Per Million: 413.7
FF:10176-103C5 60 years, female 413.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 104.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 73.1
Samples: 4

Max nTPM: 85.7
Min nTPM: 61.9
Sample A Male 85.7
Sample B Male 81.4
Sample C Female 63.2
Sample D Female 61.9
Septum
nTPM: 104.8
Samples: 4

Max nTPM: 123.0
Min nTPM: 86.1
Sample A Male 122.1
Sample B Male 123.0
Sample C Female 87.9
Sample D Female 86.1
Ventral forebrain
nTPM: 90.2
Samples: 4

Max nTPM: 102.7
Min nTPM: 68.2
Sample A Male 100.8
Sample B Male 102.7
Sample C Female 89.2
Sample D Female 68.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 3.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.0
69548958 Antisense, RP_050426_02_F05, Mouse strain C57BL/6J (56 days, male) 2.0
Pallidum
Expression energy: 3.0
69548958 Antisense, RP_050426_02_F05, Mouse strain C57BL/6J (56 days, male) 3.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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