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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.4 nTPM
HPA:9.4 nTPM
GTEx:20.6 nTPM
FANTOM5:5.1 Scaled Tags Per Million
Pig:2.2 nTPM
Mouse:1.6 nTPM
Allen mouse:1.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 9.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 9.4
2290 Female, age 72, unknown 11.1
2289 Male, age 61, right hemisphere 10.0
1857 Female, age 85, left hemisphere 9.8
2846 Female, age 79, unknown 9.7
1854 Male, age 80, left hemisphere 9.3
1781 Male, age 74, unknown 9.0
2288 Male, age 75, left hemisphere 8.3
2481 Female, age 94, left hemisphere 8.3
Claustrum
nTPM: 6.3
2568 Male, age 61, both hemispheres 7.1
2491 Male, age 75, both hemispheres 6.7
2196 Female, age 79, unknown 6.6
2284 Female, age 91, both hemispheres 6.4
1956 Male, age 74, unknown 6.2
2645 Female, age 72, unknown 6.1
2198 Male, age 80, both hemispheres 5.9
2392 Female, age 94, both hemispheres 5.9
2292 Female, age 85, both hemispheres 5.7
Globus pallidus, externus
nTPM: 5.7
2646 Male, age 61, right hemisphere 6.9
2567 Female, age 72, unknown 6.0
2395 Male, age 75, both hemispheres 5.4
2772 Female, age 79, unknown 5.3
1996 Male, age 80, right hemisphere 4.8
Globus pallidus, internus
nTPM: 5.3
2483 Female, age 94, right hemisphere 7.1
2566 Female, age 72, unknown 5.5
1818 Male, age 74, unknown 5.3
2037 Male, age 80, right hemisphere 4.9
2111 Female, age 85, right hemisphere 4.9
2287 Male, age 75, right hemisphere 4.9
2778 Female, age 91, both hemispheres 4.8
Nucleus accumbens
nTPM: 8.6
1806 Female, age 85, left hemisphere 10.0
2824 Male, age 61, right hemisphere 9.9
1783 Male, age 74, unknown 9.6
1856 Female, age 91, right hemisphere 9.5
2286 Male, age 75, left hemisphere 8.0
2698 Female, age 72, unknown 7.7
2391 Female, age 94, left hemisphere 7.2
2732 Male, age 80, right hemisphere 7.1
Nucleus basalis of Meynert
nTPM: 8.5
2484 Female, age 94, left hemisphere 10.6
2393 Male, age 80, right hemisphere 8.7
2821 Male, age 75, both hemispheres 7.5
2569 Male, age 61, both hemispheres 7.3
Nucleus of the diagonal band
nTPM: 6.9
1979 Male, age 74, unknown 7.8
2029 Male, age 61, right hemisphere 7.2
2775 Male, age 80, right hemisphere 7.0
1812 Female, age 91, both hemispheres 6.3
2195 Female, age 85, both hemispheres 6.3
Olfactory tubercle
nTPM: 6.4
1998 Female, age 91, both hemispheres 6.8
2856 Male, age 75, right hemisphere 6.6
2487 Female, age 94, left hemisphere 6.4
1846 Male, age 80, right hemisphere 5.9
Putamen
nTPM: 9.4
2466 Female, age 79, unknown 11.2
1838 Male, age 80, right hemisphere 10.4
2489 Female, age 72, unknown 10.4
2647 Male, age 75, left hemisphere 9.3
2482 Female, age 94, left hemisphere 9.0
1937 Female, age 91, right hemisphere 7.9
1829 Male, age 74, unknown 7.7
Septal nuclei
nTPM: 7.2
2199 Male, age 80, right hemisphere 8.4
2394 Male, age 61, left hemisphere 8.4
2059 Female, age 85, both hemispheres 7.6
2009 Female, age 91, both hemispheres 7.1
1960 Male, age 74, unknown 6.6
2031 Female, age 72, unknown 6.6
2629 Female, age 94, right hemisphere 5.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 20.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 19.2
Samples: 246

Max nTPM: 50.3
Min nTPM: 3.1
Std nTPM: 7.3
Median nTPM: 18.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 50.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 43.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 42.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 41.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 38.3
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 34.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 34.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 34.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 34.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 32.9
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 32.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 20.6
Samples: 246

Max nTPM: 71.1
Min nTPM: 2.2
Std nTPM: 8.5
Median nTPM: 19.7
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 71.1
GTEX-1BAJH-0011-R6b-SM-7MXT2 70-79 years, male 48.2
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 45.7
GTEX-145LU-0011-R6a-SM-5S2V6 50-59 years, male 42.7
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 39.6
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 39.1
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 36.4
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 36.0
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 35.7
GTEX-12ZZX-0011-R6a-SM-5HL8L 40-49 years, female 35.2
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 34.8
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Brain - Putamen (basal ganglia)
Average nTPM: 19.5
Samples: 205

Max nTPM: 45.5
Min nTPM: 3.2
Std nTPM: 7.7
Median nTPM: 19.3
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 45.5
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 41.3
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 35.0
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 34.9
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 34.7
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 34.0
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 33.8
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 33.5
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 33.3
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 32.2
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 32.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 5.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 5.1
FF:10164-103B2 76 years, female 5.1
Globus pallidus
Scaled Tags Per Million: 3.2
FF:10161-103A8 76 years, female 3.4
FF:10175-103C4 60 years, female 3.1
Nucleus accumbens
Scaled Tags Per Million: 2.7
FF:10037-101F1 23-56 years, mixed 2.7
Putamen
Scaled Tags Per Million: 4.6
FF:10176-103C5 60 years, female 4.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 2.2
Pig sample Sample description nTPM
Caudate
nTPM: 2.1
Samples: 4

Max nTPM: 2.9
Min nTPM: 1.2
Sample A Female 1.2
Sample B Female 2.9
Sample C Male 2.6
Sample D Male 1.6
Putamen
nTPM: 2.2
Samples: 4

Max nTPM: 2.6
Min nTPM: 1.2
Sample A Female 1.2
Sample B Female 2.5
Sample C Male 2.6
Sample D Male 2.5
Septum
nTPM: 1.7
Samples: 4

Max nTPM: 1.8
Min nTPM: 1.6
Sample A Female 1.7
Sample B Female 1.8
Sample C Male 1.6
Sample D Male 1.8
Ventral pallidum
nTPM: 1.8
Samples: 4

Max nTPM: 2.5
Min nTPM: 1.5
Sample A Female 1.5
Sample B Female 1.8
Sample C Male 2.5
Sample D Male 1.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 1.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 1.3
Samples: 4

Max nTPM: 1.9
Min nTPM: 0.3
Sample A Male 1.7
Sample B Male 1.9
Sample C Female 1.1
Sample D Female 0.3
Septum
nTPM: 1.6
Samples: 4

Max nTPM: 2.0
Min nTPM: 1.1
Sample A Male 1.6
Sample B Male 1.7
Sample C Female 1.1
Sample D Female 2.0
Ventral forebrain
nTPM: 1.5
Samples: 4

Max nTPM: 1.9
Min nTPM: 1.0
Sample A Male 1.9
Sample B Male 1.5
Sample C Female 1.7
Sample D Female 1.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.7
68302317 Antisense, RP_041130_02_F04, Mouse strain C57BL/6J (56 days, male) 0.7
Pallidum
Expression energy: 1.0
68302317 Antisense, RP_041130_02_F04, Mouse strain C57BL/6J (56 days, male) 1.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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