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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.8 nTPM
HPA:16.8 nTPM
GTEx:11.4 nTPM
FANTOM5:58.7 Scaled Tags Per Million
Pig:18.1 nTPM
Mouse:17.5 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 16.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 13.5
2019 Male, age 18, unknown 17.4
2411 Female, age 72, unknown 16.1
2586 Male, age 75, left hemisphere 15.5
1870 Female, age 42, unknown 15.4
1830 Male, age 51, unknown 15.3
1833 Male, age 53, unknown 14.3
2666 Male, age 74, left hemisphere 13.0
2828 Female, age 72, unknown 11.6
1827 Male, age 72, unknown 8.7
2219 Male, age 76, both hemispheres 7.3
Dorsal raphe nucleus
nTPM: 9.3
2750 Male, age 76, both hemispheres 13.9
2016 Female, age 72, unknown 9.5
1828 Male, age 53, unknown 9.1
2047 Male, age 72, unknown 8.0
2298 Female, age 72, unknown 5.7
Inferior colliculus
nTPM: 7.9
1890 Male, age 53, unknown 9.6
1848 Female, age 42, unknown 8.6
2849 Male, age 72, unknown 7.2
2097 Female, age 72, unknown 6.0
Median raphe nucleus
nTPM: 9.0
2220 Male, age 76, midline 9.0
Pedunculopontine tegmental nucleus
nTPM: 11.5
2338 Male, age 61, both hemispheres 14.3
2334 Male, age 80, both hemispheres 10.8
1921 Female, age 85, both hemispheres 9.4
Periaquaductal grey, anterior
nTPM: 7.4
2502 Female, age 75, unknown 8.5
1947 Male, age 18, unknown 7.4
1795 Male, age 51, unknown 6.3
Periaquaductal grey, dorsal
nTPM: 6.7
2464 Female, age 72, unknown 9.1
1831 Male, age 72, unknown 8.1
2850 Male, age 76, both hemispheres 6.0
1840 Male, age 53, unknown 3.7
Periaquaductal grey, lateral
nTPM: 7.4
2053 Male, age 18, unknown 8.1
2272 Male, age 74, both hemispheres 7.5
2140 Male, age 76, both hemispheres 6.6
Pretectal area
nTPM: 8.3
2407 Male, age 75, both hemispheres 12.6
2316 Male, age 76, right hemisphere 10.6
2007 Male, age 72, unknown 9.7
1815 Male, age 53, unknown 9.6
1817 Female, age 42, unknown 9.1
2825 Male, age 18, unknown 8.4
2667 Female, age 75, unknown 7.3
1944 Female, age 72, unknown 6.1
1816 Male, age 51, unknown 6.0
2273 Male, age 74, both hemispheres 6.0
2224 Female, age 72, unknown 5.4
Red nucleus
nTPM: 16.8
2227 Male, age 72, unknown 19.1
2769 Male, age 72, unknown 18.9
1904 Male, age 53, unknown 18.7
1865 Male, age 51, unknown 18.6
2584 Male, age 75, left hemisphere 18.5
2588 Male, age 74, left hemisphere 17.5
2785 Male, age 18, unknown 17.5
2823 Male, age 76, right hemisphere 17.1
1954 Female, age 42, unknown 15.9
2503 Female, age 72, unknown 15.4
1821 Female, age 72, unknown 14.8
2725 Female, age 75, unknown 10.2
Substantia nigra
nTPM: 9.4
2583 Male, age 75, right hemisphere 15.1
2590 Female, age 75, unknown 11.0
1941 Male, age 53, unknown 10.5
1851 Male, age 51, unknown 9.8
1889 Female, age 72, unknown 9.1
2699 Male, age 18, unknown 8.7
2409 Female, age 72, unknown 8.3
2665 Male, age 74, both hemispheres 8.0
1916 Female, age 42, unknown 7.1
2241 Male, age 72, unknown 6.3
Superior colliculus
nTPM: 10.6
1913 Female, age 42, unknown 14.9
2668 Female, age 75, unknown 13.8
1995 Male, age 72, unknown 13.3
1839 Male, age 51, unknown 11.5
2664 Male, age 75, both hemispheres 10.5
2587 Male, age 74, left hemisphere 10.1
1895 Male, age 76, right hemisphere 9.5
2087 Female, age 72, unknown 8.0
1796 Male, age 53, unknown 7.8
2261 Male, age 18, unknown 6.6
Ventral tegmental area
nTPM: 11.3
2223 Female, age 72, unknown 18.4
2410 Female, age 72, unknown 11.6
2021 Male, age 53, unknown 10.7
1942 Male, age 51, unknown 10.4
2218 Male, age 76, both hemispheres 8.7
1915 Female, age 42, unknown 8.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 11.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.4
Samples: 139

Max nTPM: 36.1
Min nTPM: 3.6
Std nTPM: 5.1
Median nTPM: 10.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 36.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 34.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 29.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 23.7
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 22.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 21.1
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 20.2
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 19.0
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 18.5
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 18.4
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 17.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 58.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 58.7
FF:10158-103A5 76 years, female 58.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 18.1
Pig sample Sample description nTPM
Midbrain
nTPM: 16.4
Samples: 4

Max nTPM: 20.6
Min nTPM: 13.6
Sample A Female 20.6
Sample B Female 15.4
Sample C Male 13.6
Sample D Male 16.0
Periaqueductal gray
nTPM: 12.7
Samples: 3

Max nTPM: 13.3
Min nTPM: 11.7
Sample B Female 13.3
Sample C Male 11.7
Sample D Male 13.2
Substantia nigra
nTPM: 18.2
Samples: 4

Max nTPM: 26.1
Min nTPM: 13.7
Sample A Female 14.3
Sample B Female 13.7
Sample C Male 18.5
Sample D Male 26.1
Superior colliculi
nTPM: 14.9
Samples: 4

Max nTPM: 19.6
Min nTPM: 11.4
Sample A Female 13.3
Sample B Female 11.4
Sample C Male 15.2
Sample D Male 19.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 17.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 17.5
Samples: 4

Max nTPM: 18.4
Min nTPM: 15.4
Sample A Male 18.4
Sample B Male 15.4
Sample C Female 17.7
Sample D Female 18.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
71152294 Antisense, RP_050719_03_F11, Mouse strain C57BL/6J (56 days, male) 0.4
74076240 Antisense, RP_051219_03_A08, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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