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CBY1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:40.4 nTPM
HPA:40.4 nTPM
GTEx:30.9 nTPM
FANTOM5:17.1 Scaled Tags Per Million
Mouse:53.1 nTPM
Allen mouse:5.6 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 40.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 38.7
2586 Male, age 75, left hemisphere 41.6
2828 Female, age 72, unknown 40.1
1833 Male, age 53, unknown 39.8
1830 Male, age 51, unknown 39.4
1870 Female, age 42, unknown 39.3
2666 Male, age 74, left hemisphere 39.0
1827 Male, age 72, unknown 38.3
2411 Female, age 72, unknown 37.5
2219 Male, age 76, both hemispheres 36.2
2019 Male, age 18, unknown 36.0
Dorsal raphe nucleus
nTPM: 37.7
2016 Female, age 72, unknown 40.2
1828 Male, age 53, unknown 38.7
2047 Male, age 72, unknown 37.7
2298 Female, age 72, unknown 36.3
2750 Male, age 76, both hemispheres 35.8
Inferior colliculus
nTPM: 38.4
2849 Male, age 72, unknown 41.1
1848 Female, age 42, unknown 38.5
1890 Male, age 53, unknown 37.9
2097 Female, age 72, unknown 36.0
Median raphe nucleus
nTPM: 35.5
2220 Male, age 76, midline 35.5
Pedunculopontine tegmental nucleus
nTPM: 36.5
1921 Female, age 85, both hemispheres 36.9
2338 Male, age 61, both hemispheres 36.3
2334 Male, age 80, both hemispheres 36.1
Periaquaductal grey, anterior
nTPM: 37.2
1795 Male, age 51, unknown 38.7
1947 Male, age 18, unknown 37.8
2502 Female, age 75, unknown 35.2
Periaquaductal grey, dorsal
nTPM: 40.0
2850 Male, age 76, both hemispheres 42.9
1840 Male, age 53, unknown 39.9
1831 Male, age 72, unknown 39.4
2464 Female, age 72, unknown 37.8
Periaquaductal grey, lateral
nTPM: 40.4
2140 Male, age 76, both hemispheres 41.7
2053 Male, age 18, unknown 41.5
2272 Male, age 74, both hemispheres 38.1
Pretectal area
nTPM: 38.0
2825 Male, age 18, unknown 41.9
2407 Male, age 75, both hemispheres 41.1
2273 Male, age 74, both hemispheres 39.7
2316 Male, age 76, right hemisphere 39.1
2667 Female, age 75, unknown 38.8
2224 Female, age 72, unknown 38.0
1816 Male, age 51, unknown 36.4
1944 Female, age 72, unknown 36.0
1815 Male, age 53, unknown 35.9
1817 Female, age 42, unknown 35.6
2007 Male, age 72, unknown 35.5
Red nucleus
nTPM: 39.1
2584 Male, age 75, left hemisphere 40.7
2725 Female, age 75, unknown 40.4
1954 Female, age 42, unknown 39.8
1904 Male, age 53, unknown 39.6
2588 Male, age 74, left hemisphere 39.6
1865 Male, age 51, unknown 39.2
2227 Male, age 72, unknown 39.1
2823 Male, age 76, right hemisphere 38.7
2503 Female, age 72, unknown 38.6
2769 Male, age 72, unknown 38.1
2785 Male, age 18, unknown 37.9
1821 Female, age 72, unknown 37.7
Substantia nigra
nTPM: 36.8
2583 Male, age 75, right hemisphere 40.4
2699 Male, age 18, unknown 38.4
2665 Male, age 74, both hemispheres 38.2
2590 Female, age 75, unknown 38.0
1941 Male, age 53, unknown 36.6
1851 Male, age 51, unknown 35.9
1889 Female, age 72, unknown 35.7
2409 Female, age 72, unknown 35.3
1916 Female, age 42, unknown 35.0
2241 Male, age 72, unknown 35.0
Superior colliculus
nTPM: 38.7
2664 Male, age 75, both hemispheres 43.6
1995 Male, age 72, unknown 42.8
1913 Female, age 42, unknown 38.9
1796 Male, age 53, unknown 38.4
1839 Male, age 51, unknown 38.3
1895 Male, age 76, right hemisphere 37.5
2668 Female, age 75, unknown 37.4
2087 Female, age 72, unknown 37.3
2587 Male, age 74, left hemisphere 37.2
2261 Male, age 18, unknown 35.7
Ventral tegmental area
nTPM: 36.1
1915 Female, age 42, unknown 36.6
1942 Male, age 51, unknown 36.5
2021 Male, age 53, unknown 36.4
2218 Male, age 76, both hemispheres 36.2
2223 Female, age 72, unknown 36.2
2410 Female, age 72, unknown 34.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 30.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 30.9
Samples: 139

Max nTPM: 54.7
Min nTPM: 11.1
Std nTPM: 8.3
Median nTPM: 30.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 54.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 54.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 54.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 47.7
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 47.6
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 45.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 45.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 45.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 44.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 44.1
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 43.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 17.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 17.1
FF:10158-103A5 76 years, female 17.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 53.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 53.1
Samples: 4

Max nTPM: 59.1
Min nTPM: 50.5
Sample A Male 51.7
Sample B Male 50.5
Sample C Female 51.2
Sample D Female 59.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.6
69059941 Antisense, RP_050317_04_F01, Mouse strain C57BL/6J (56 days, male) 5.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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