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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:26.5 nTPM
HPA:26.5 nTPM
GTEx:26.3 nTPM
FANTOM5:15.9 Scaled Tags Per Million
Pig:13.8 nTPM
Mouse:39.2 nTPM
Allen mouse:1.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 26.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 25.8
2586 Male, age 75, left hemisphere 28.1
2828 Female, age 72, unknown 27.9
2019 Male, age 18, unknown 27.0
1870 Female, age 42, unknown 25.6
2666 Male, age 74, left hemisphere 25.4
1833 Male, age 53, unknown 25.3
1827 Male, age 72, unknown 25.1
1830 Male, age 51, unknown 25.1
2411 Female, age 72, unknown 24.9
2219 Male, age 76, both hemispheres 24.1
Dorsal raphe nucleus
nTPM: 25.1
2016 Female, age 72, unknown 25.8
2298 Female, age 72, unknown 25.4
1828 Male, age 53, unknown 25.1
2047 Male, age 72, unknown 24.7
2750 Male, age 76, both hemispheres 24.5
Inferior colliculus
nTPM: 25.2
1890 Male, age 53, unknown 25.4
2849 Male, age 72, unknown 25.4
1848 Female, age 42, unknown 25.0
2097 Female, age 72, unknown 25.0
Median raphe nucleus
nTPM: 24.5
2220 Male, age 76, midline 24.5
Pedunculopontine tegmental nucleus
nTPM: 25.0
1921 Female, age 85, both hemispheres 25.7
2334 Male, age 80, both hemispheres 24.7
2338 Male, age 61, both hemispheres 24.6
Periaquaductal grey, anterior
nTPM: 25.4
1795 Male, age 51, unknown 25.7
2502 Female, age 75, unknown 25.3
1947 Male, age 18, unknown 25.2
Periaquaductal grey, dorsal
nTPM: 25.2
2850 Male, age 76, both hemispheres 25.7
1840 Male, age 53, unknown 25.6
1831 Male, age 72, unknown 24.9
2464 Female, age 72, unknown 24.5
Periaquaductal grey, lateral
nTPM: 24.9
2140 Male, age 76, both hemispheres 25.1
2272 Male, age 74, both hemispheres 25.1
2053 Male, age 18, unknown 24.5
Pretectal area
nTPM: 25.5
1817 Female, age 42, unknown 26.8
2007 Male, age 72, unknown 26.7
1815 Male, age 53, unknown 26.6
2273 Male, age 74, both hemispheres 26.2
1944 Female, age 72, unknown 26.1
2667 Female, age 75, unknown 25.4
1816 Male, age 51, unknown 25.0
2407 Male, age 75, both hemispheres 25.0
2224 Female, age 72, unknown 24.6
2825 Male, age 18, unknown 24.4
2316 Male, age 76, right hemisphere 23.7
Red nucleus
nTPM: 26.5
1954 Female, age 42, unknown 27.7
2725 Female, age 75, unknown 27.4
2785 Male, age 18, unknown 27.0
2503 Female, age 72, unknown 26.9
1821 Female, age 72, unknown 26.8
1865 Male, age 51, unknown 26.7
1904 Male, age 53, unknown 26.6
2769 Male, age 72, unknown 26.6
2227 Male, age 72, unknown 26.2
2823 Male, age 76, right hemisphere 26.2
2588 Male, age 74, left hemisphere 25.4
2584 Male, age 75, left hemisphere 24.7
Substantia nigra
nTPM: 25.7
2665 Male, age 74, both hemispheres 27.6
1916 Female, age 42, unknown 27.2
2699 Male, age 18, unknown 26.7
1851 Male, age 51, unknown 26.3
1889 Female, age 72, unknown 26.3
2241 Male, age 72, unknown 25.6
2583 Male, age 75, right hemisphere 25.6
1941 Male, age 53, unknown 24.9
2590 Female, age 75, unknown 24.5
2409 Female, age 72, unknown 22.9
Superior colliculus
nTPM: 25.9
2664 Male, age 75, both hemispheres 26.6
2668 Female, age 75, unknown 26.6
1913 Female, age 42, unknown 26.5
1995 Male, age 72, unknown 26.1
2587 Male, age 74, left hemisphere 26.1
1796 Male, age 53, unknown 25.9
2087 Female, age 72, unknown 25.8
1895 Male, age 76, right hemisphere 25.5
1839 Male, age 51, unknown 25.1
2261 Male, age 18, unknown 25.1
Ventral tegmental area
nTPM: 25.7
2410 Female, age 72, unknown 26.6
1942 Male, age 51, unknown 26.5
1915 Female, age 42, unknown 25.7
2223 Female, age 72, unknown 25.4
2021 Male, age 53, unknown 25.0
2218 Male, age 76, both hemispheres 24.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 26.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 26.3
Samples: 139

Max nTPM: 54.7
Min nTPM: 11.9
Std nTPM: 7.5
Median nTPM: 25.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 54.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 53.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 52.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 44.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 42.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 42.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 41.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 41.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 41.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 40.4
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 35.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 15.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 15.9
FF:10158-103A5 76 years, female 15.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 13.8
Pig sample Sample description nTPM
Midbrain
nTPM: 13.9
Samples: 4

Max nTPM: 23.0
Min nTPM: 9.6
Sample A Female 23.0
Sample B Female 12.6
Sample C Male 10.3
Sample D Male 9.6
Periaqueductal gray
nTPM: 10.1
Samples: 3

Max nTPM: 10.7
Min nTPM: 9.7
Sample B Female 9.9
Sample C Male 10.7
Sample D Male 9.7
Substantia nigra
nTPM: 11.8
Samples: 4

Max nTPM: 16.6
Min nTPM: 8.5
Sample A Female 16.6
Sample B Female 8.5
Sample C Male 8.7
Sample D Male 13.3
Superior colliculi
nTPM: 12.5
Samples: 4

Max nTPM: 15.7
Min nTPM: 10.2
Sample A Female 15.7
Sample B Female 10.2
Sample C Male 11.7
Sample D Male 12.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 39.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 39.2
Samples: 4

Max nTPM: 43.2
Min nTPM: 36.5
Sample A Male 43.2
Sample B Male 36.5
Sample C Female 36.9
Sample D Female 40.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.7
68632214 Antisense, RP_050125_01_H09, Mouse strain C57BL/6J (56 days, male) 1.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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