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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:37.9 nTPM
HPA:37.9 nTPM
GTEx:52.9 nTPM
FANTOM5:32.3 Scaled Tags Per Million
Pig:103.8 nTPM
Mouse:182.5 nTPM
Allen mouse:10.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 37.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 27.3
1827 Male, age 72, unknown 48.5
2219 Male, age 76, both hemispheres 45.1
2828 Female, age 72, unknown 42.6
2666 Male, age 74, left hemisphere 36.3
2586 Male, age 75, left hemisphere 35.7
2019 Male, age 18, unknown 23.4
2411 Female, age 72, unknown 17.8
1833 Male, age 53, unknown 10.0
1870 Female, age 42, unknown 10.0
1830 Male, age 51, unknown 3.2
Dorsal raphe nucleus
nTPM: 12.4
2298 Female, age 72, unknown 20.7
2750 Male, age 76, both hemispheres 17.4
2047 Male, age 72, unknown 12.1
1828 Male, age 53, unknown 11.9
2016 Female, age 72, unknown 0.0
Inferior colliculus
nTPM: 12.8
2097 Female, age 72, unknown 22.3
1848 Female, age 42, unknown 11.7
1890 Male, age 53, unknown 10.7
2849 Male, age 72, unknown 6.5
Median raphe nucleus
nTPM: 30.3
2220 Male, age 76, midline 30.3
Pedunculopontine tegmental nucleus
nTPM: 16.5
1921 Female, age 85, both hemispheres 34.5
2334 Male, age 80, both hemispheres 14.6
2338 Male, age 61, both hemispheres 0.3
Periaquaductal grey, anterior
nTPM: 37.9
1795 Male, age 51, unknown 49.6
1947 Male, age 18, unknown 33.0
2502 Female, age 75, unknown 31.1
Periaquaductal grey, dorsal
nTPM: 9.8
1831 Male, age 72, unknown 15.6
1840 Male, age 53, unknown 12.0
2464 Female, age 72, unknown 10.1
2850 Male, age 76, both hemispheres 1.7
Periaquaductal grey, lateral
nTPM: 4.3
2053 Male, age 18, unknown 9.6
2140 Male, age 76, both hemispheres 3.5
2272 Male, age 74, both hemispheres 0.0
Pretectal area
nTPM: 36.7
1816 Male, age 51, unknown 79.9
1944 Female, age 72, unknown 65.8
2007 Male, age 72, unknown 60.9
1817 Female, age 42, unknown 51.2
1815 Male, age 53, unknown 50.0
2667 Female, age 75, unknown 49.1
2825 Male, age 18, unknown 13.0
2224 Female, age 72, unknown 12.8
2407 Male, age 75, both hemispheres 11.9
2316 Male, age 76, right hemisphere 8.8
2273 Male, age 74, both hemispheres 0.0
Red nucleus
nTPM: 7.9
2584 Male, age 75, left hemisphere 24.4
2785 Male, age 18, unknown 23.8
2588 Male, age 74, left hemisphere 18.7
2725 Female, age 75, unknown 16.2
2823 Male, age 76, right hemisphere 3.6
1821 Female, age 72, unknown 2.7
1954 Female, age 42, unknown 2.6
1904 Male, age 53, unknown 2.3
2503 Female, age 72, unknown 1.2
1865 Male, age 51, unknown 0.0
2227 Male, age 72, unknown 0.0
2769 Male, age 72, unknown 0.0
Substantia nigra
nTPM: 31.0
2665 Male, age 74, both hemispheres 64.0
1916 Female, age 42, unknown 51.1
1889 Female, age 72, unknown 46.1
1851 Male, age 51, unknown 41.7
1941 Male, age 53, unknown 30.2
2241 Male, age 72, unknown 26.3
2409 Female, age 72, unknown 21.7
2583 Male, age 75, right hemisphere 12.7
2699 Male, age 18, unknown 9.6
2590 Female, age 75, unknown 6.4
Superior colliculus
nTPM: 26.0
2087 Female, age 72, unknown 55.1
1796 Male, age 53, unknown 48.2
2261 Male, age 18, unknown 40.9
2664 Male, age 75, both hemispheres 31.7
2668 Female, age 75, unknown 27.7
1895 Male, age 76, right hemisphere 18.6
1839 Male, age 51, unknown 10.7
1995 Male, age 72, unknown 10.7
1913 Female, age 42, unknown 9.4
2587 Male, age 74, left hemisphere 6.6
Ventral tegmental area
nTPM: 26.4
2218 Male, age 76, both hemispheres 41.9
2410 Female, age 72, unknown 37.0
1915 Female, age 42, unknown 32.7
1942 Male, age 51, unknown 28.6
2021 Male, age 53, unknown 10.4
2223 Female, age 72, unknown 8.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 52.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 52.9
Samples: 139

Max nTPM: 159.9
Min nTPM: 13.4
Std nTPM: 30.6
Median nTPM: 43.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 159.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 148.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 137.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 136.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 135.1
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 115.0
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 110.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 108.7
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 106.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 104.6
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 104.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 32.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 32.3
FF:10158-103A5 76 years, female 32.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 103.8
Pig sample Sample description nTPM
Midbrain
nTPM: 103.9
Samples: 4

Max nTPM: 189.8
Min nTPM: 67.3
Sample A Female 67.3
Sample B Female 70.5
Sample C Male 189.8
Sample D Male 87.8
Periaqueductal gray
nTPM: 61.0
Samples: 3

Max nTPM: 72.5
Min nTPM: 49.4
Sample B Female 61.2
Sample C Male 72.5
Sample D Male 49.4
Substantia nigra
nTPM: 82.7
Samples: 4

Max nTPM: 111.6
Min nTPM: 48.9
Sample A Female 111.6
Sample B Female 65.9
Sample C Male 104.2
Sample D Male 48.9
Superior colliculi
nTPM: 96.9
Samples: 4

Max nTPM: 125.7
Min nTPM: 71.0
Sample A Female 96.7
Sample B Female 71.0
Sample C Male 125.7
Sample D Male 94.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 182.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 182.5
Samples: 4

Max nTPM: 194.4
Min nTPM: 171.0
Sample A Male 171.0
Sample B Male 177.5
Sample C Female 194.4
Sample D Female 187.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.3
70303719 Antisense, RP_050609_02_B10, Mouse strain C57BL/6J (56 days, male) 10.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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