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SAMM50
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni
Consensus:27.1 nTPM
HPA:27.1 nTPM
GTEx:23.1 nTPM
FANTOM5:35.2 Scaled Tags Per Million
Pig:20.6 nTPM
Mouse:26.5 nTPM
Allen mouse:0.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA034537
Glial cells Low
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 27.1
Sample id Sample description nTPM
Hippocampus
nTPM: 26.4
1898 Male, age 80, left hemisphere 28.5
2529 Female, age 94, left hemisphere 27.1
2621 Female, age 67, right hemisphere 26.5
2148 Female, age 91, left hemisphere 25.9
1855 Male, age 76, left hemisphere 25.4
1911 Female, age 85, right hemisphere 25.1
Dentate gyrus
nTPM: 25.9
2530 Female, age 94, left hemisphere 27.0
1927 Female, age 91, both hemispheres 26.7
2528 Male, age 74, both hemispheres 25.6
2010 Male, age 76, both hemispheres 25.4
2246 Female, age 85, both hemispheres 25.3
2531 Female, age 67, both hemispheres 25.3
Entorhinal gyrus
nTPM: 25.8
2764 Male, age 80, right hemisphere 27.3
1787 Male, age 76, left hemisphere 26.4
1938 Female, age 85, left hemisphere 25.7
2117 Female, age 91, right hemisphere 25.3
2686 Male, age 75, right hemisphere 25.1
2613 Female, age 94, left hemisphere 24.9
Hippocampus, CA1
nTPM: 26.7
2749 Male, age 80, left hemisphere 30.6
2527 Male, age 74, both hemispheres 27.6
1873 Female, age 85, both hemispheres 26.2
2082 Female, age 91, right hemisphere 24.8
2045 Male, age 76, both hemispheres 24.4
Hippocampus, CA2
nTPM: 27.0
1892 Male, age 76, both hemispheres 29.1
1963 Male, age 80, left hemisphere 28.0
2249 Male, age 74, both hemispheres 27.8
2437 Female, age 94, left hemisphere 26.5
2113 Female, age 91, right hemisphere 25.8
1940 Female, age 85, left hemisphere 24.7
Hippocampus, CA3
nTPM: 26.7
2436 Male, age 74, both hemispheres 28.4
1867 Male, age 76, both hemispheres 28.2
2137 Male, age 80, left hemisphere 27.9
2861 Female, age 67, both hemispheres 25.7
1891 Female, age 85, both hemispheres 25.6
2620 Female, age 94, left hemisphere 24.5
Parahippocampal cortex
nTPM: 25.6
1850 Male, age 80, both hemispheres 27.5
1990 Female, age 91, right hemisphere 27.0
1933 Female, age 85, both hemispheres 26.1
2250 Female, age 67, right hemisphere 26.0
2532 Female, age 72, left hemisphere 25.6
2245 Female, age 91, both hemispheres 25.2
2692 Male, age 74, both hemispheres 25.1
2693 Female, age 94, both hemispheres 25.0
2622 Female, age 67, right hemisphere 24.6
2018 Male, age 76, both hemispheres 24.0
Perirhinal gyrus
nTPM: 27.1
1847 Female, age 91, left hemisphere 28.5
1794 Male, age 80, right hemisphere 27.9
1841 Female, age 85, right hemisphere 27.7
2848 Male, age 76, right hemisphere 25.7
2521 Female, age 94, right hemisphere 25.6
Subiculum
nTPM: 25.2
1977 Female, age 85, both hemispheres 26.2
1901 Male, age 80, both hemispheres 25.9
2438 Female, age 94, left hemisphere 25.4
2619 Male, age 74, both hemispheres 25.3
2042 Male, age 76, both hemispheres 24.3
2729 Female, age 91, right hemisphere 24.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 23.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 23.1
Samples: 197

Max nTPM: 40.5
Min nTPM: 13.5
Std nTPM: 3.7
Median nTPM: 22.5
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 40.5
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 35.6
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 32.9
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 31.5
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 31.1
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 30.8
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 30.3
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 30.2
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 30.2
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 29.9
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 29.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 35.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 35.2
FF:10169-103B7 60 years, female 37.6
FF:10153-102I9 76 years, female 32.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 20.6
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 20.6
Samples: 4

Max nTPM: 27.7
Min nTPM: 15.4
Sample A Female 27.7
Sample B Female 20.8
Sample C Male 18.3
Sample D Male 15.4
Entorhinal cortex
nTPM: 18.8
Samples: 4

Max nTPM: 22.5
Min nTPM: 15.0
Sample A Female 20.2
Sample B Female 22.5
Sample C Male 17.6
Sample D Male 15.0
Subiculum
nTPM: 16.7
Samples: 4

Max nTPM: 22.4
Min nTPM: 13.7
Sample A Female 22.4
Sample B Female 15.1
Sample C Male 15.5
Sample D Male 13.7
Ventral hippocampus
nTPM: 19.6
Samples: 4

Max nTPM: 22.7
Min nTPM: 13.4
Sample A Female 22.7
Sample B Female 13.4
Sample C Male 22.1
Sample D Male 20.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 26.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 26.2
Samples: 4

Max nTPM: 28.3
Min nTPM: 24.3
Sample A Male 24.3
Sample B Male 25.6
Sample C Female 26.6
Sample D Female 28.3
Hippocampal formation
nTPM: 26.5
Samples: 4

Max nTPM: 27.1
Min nTPM: 25.9
Sample A Male 26.3
Sample B Male 25.9
Sample C Female 27.1
Sample D Female 26.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.3
70598377 Antisense, RP_050412_01_E03, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

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