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SAMM50
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:28.5 nTPM
HPA:28.5 nTPM
GTEx:25.7 nTPM
FANTOM5:34.0 Scaled Tags Per Million
Pig:27.4 nTPM
Mouse:25.2 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 28.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 25.9
2219 Male, age 76, both hemispheres 27.9
2019 Male, age 18, unknown 27.7
2411 Female, age 72, unknown 27.3
1827 Male, age 72, unknown 26.2
1833 Male, age 53, unknown 26.1
1870 Female, age 42, unknown 25.7
2666 Male, age 74, left hemisphere 25.3
1830 Male, age 51, unknown 25.0
2828 Female, age 72, unknown 24.7
2586 Male, age 75, left hemisphere 23.1
Dorsal raphe nucleus
nTPM: 27.3
2298 Female, age 72, unknown 28.7
2750 Male, age 76, both hemispheres 27.9
1828 Male, age 53, unknown 27.5
2047 Male, age 72, unknown 27.5
2016 Female, age 72, unknown 24.9
Inferior colliculus
nTPM: 27.0
2097 Female, age 72, unknown 28.3
1890 Male, age 53, unknown 27.5
1848 Female, age 42, unknown 26.8
2849 Male, age 72, unknown 25.6
Median raphe nucleus
nTPM: 27.2
2220 Male, age 76, midline 27.2
Pedunculopontine tegmental nucleus
nTPM: 26.7
1921 Female, age 85, both hemispheres 27.7
2334 Male, age 80, both hemispheres 26.6
2338 Male, age 61, both hemispheres 25.8
Periaquaductal grey, anterior
nTPM: 26.0
1947 Male, age 18, unknown 26.7
2502 Female, age 75, unknown 26.1
1795 Male, age 51, unknown 25.4
Periaquaductal grey, dorsal
nTPM: 24.5
2464 Female, age 72, unknown 24.9
1840 Male, age 53, unknown 24.7
2850 Male, age 76, both hemispheres 24.2
1831 Male, age 72, unknown 24.1
Periaquaductal grey, lateral
nTPM: 24.7
2272 Male, age 74, both hemispheres 26.1
2053 Male, age 18, unknown 24.8
2140 Male, age 76, both hemispheres 23.2
Pretectal area
nTPM: 26.5
1944 Female, age 72, unknown 28.1
1817 Female, age 42, unknown 28.0
1816 Male, age 51, unknown 27.8
2007 Male, age 72, unknown 27.7
2667 Female, age 75, unknown 27.7
2224 Female, age 72, unknown 26.7
2273 Male, age 74, both hemispheres 26.2
1815 Male, age 53, unknown 26.1
2316 Male, age 76, right hemisphere 25.3
2825 Male, age 18, unknown 24.7
2407 Male, age 75, both hemispheres 22.9
Red nucleus
nTPM: 26.4
1821 Female, age 72, unknown 29.4
1954 Female, age 42, unknown 27.2
1904 Male, age 53, unknown 26.9
1865 Male, age 51, unknown 26.8
2503 Female, age 72, unknown 26.6
2725 Female, age 75, unknown 26.6
2823 Male, age 76, right hemisphere 26.3
2227 Male, age 72, unknown 26.2
2769 Male, age 72, unknown 26.0
2785 Male, age 18, unknown 25.9
2588 Male, age 74, left hemisphere 25.0
2584 Male, age 75, left hemisphere 23.7
Substantia nigra
nTPM: 28.5
1916 Female, age 42, unknown 33.3
2241 Male, age 72, unknown 30.5
1851 Male, age 51, unknown 30.3
2409 Female, age 72, unknown 30.1
1941 Male, age 53, unknown 28.5
1889 Female, age 72, unknown 27.9
2665 Male, age 74, both hemispheres 27.1
2699 Male, age 18, unknown 26.8
2590 Female, age 75, unknown 25.8
2583 Male, age 75, right hemisphere 24.3
Superior colliculus
nTPM: 25.5
1895 Male, age 76, right hemisphere 27.6
2087 Female, age 72, unknown 27.0
2587 Male, age 74, left hemisphere 26.6
2261 Male, age 18, unknown 26.2
2668 Female, age 75, unknown 26.0
1796 Male, age 53, unknown 25.9
1839 Male, age 51, unknown 24.9
1913 Female, age 42, unknown 24.5
1995 Male, age 72, unknown 24.1
2664 Male, age 75, both hemispheres 22.0
Ventral tegmental area
nTPM: 27.6
2218 Male, age 76, both hemispheres 29.7
2410 Female, age 72, unknown 29.6
1915 Female, age 42, unknown 28.5
2223 Female, age 72, unknown 26.6
1942 Male, age 51, unknown 25.9
2021 Male, age 53, unknown 25.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 25.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 25.7
Samples: 139

Max nTPM: 50.2
Min nTPM: 14.5
Std nTPM: 5.5
Median nTPM: 24.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 50.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 42.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 42.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 39.9
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 37.7
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 35.9
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 35.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 35.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 35.2
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 34.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 34.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 34.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 34.0
FF:10158-103A5 76 years, female 34.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 27.4
Pig sample Sample description nTPM
Midbrain
nTPM: 24.0
Samples: 4

Max nTPM: 28.9
Min nTPM: 20.2
Sample A Female 28.9
Sample B Female 20.2
Sample C Male 25.2
Sample D Male 21.7
Periaqueductal gray
nTPM: 16.2
Samples: 3

Max nTPM: 18.4
Min nTPM: 13.3
Sample B Female 18.4
Sample C Male 17.0
Sample D Male 13.3
Substantia nigra
nTPM: 20.3
Samples: 4

Max nTPM: 28.6
Min nTPM: 16.4
Sample A Female 28.6
Sample B Female 16.4
Sample C Male 19.0
Sample D Male 17.1
Superior colliculi
nTPM: 27.4
Samples: 4

Max nTPM: 33.9
Min nTPM: 20.9
Sample A Female 30.6
Sample B Female 20.9
Sample C Male 33.9
Sample D Male 24.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 25.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 25.3
Samples: 4

Max nTPM: 26.2
Min nTPM: 24.4
Sample A Male 25.2
Sample B Male 25.2
Sample C Female 24.4
Sample D Female 26.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
70598377 Antisense, RP_050412_01_E03, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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