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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:192.6 nTPM
HPA:192.6 nTPM
GTEx:190.5 nTPM
FANTOM5:207.1 Scaled Tags Per Million
Pig:27.8 nTPM
Mouse:49.1 nTPM
Allen mouse:4.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 192.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 186.7
2586 Male, age 75, left hemisphere 212.8
2666 Male, age 74, left hemisphere 194.2
2828 Female, age 72, unknown 192.6
2411 Female, age 72, unknown 192.1
1830 Male, age 51, unknown 191.3
1833 Male, age 53, unknown 191.1
1870 Female, age 42, unknown 182.0
1827 Male, age 72, unknown 177.0
2019 Male, age 18, unknown 169.1
2219 Male, age 76, both hemispheres 165.0
Dorsal raphe nucleus
nTPM: 171.7
2016 Female, age 72, unknown 178.7
2750 Male, age 76, both hemispheres 175.0
2047 Male, age 72, unknown 174.8
1828 Male, age 53, unknown 171.6
2298 Female, age 72, unknown 158.5
Inferior colliculus
nTPM: 166.2
2849 Male, age 72, unknown 169.9
1848 Female, age 42, unknown 169.0
1890 Male, age 53, unknown 165.9
2097 Female, age 72, unknown 159.7
Median raphe nucleus
nTPM: 160.0
2220 Male, age 76, midline 160.0
Pedunculopontine tegmental nucleus
nTPM: 166.1
2334 Male, age 80, both hemispheres 169.5
1921 Female, age 85, both hemispheres 166.1
2338 Male, age 61, both hemispheres 162.6
Periaquaductal grey, anterior
nTPM: 173.9
1947 Male, age 18, unknown 179.3
2502 Female, age 75, unknown 176.3
1795 Male, age 51, unknown 165.9
Periaquaductal grey, dorsal
nTPM: 166.0
2464 Female, age 72, unknown 180.1
1831 Male, age 72, unknown 169.5
2850 Male, age 76, both hemispheres 158.1
1840 Male, age 53, unknown 156.4
Periaquaductal grey, lateral
nTPM: 167.5
2053 Male, age 18, unknown 181.0
2272 Male, age 74, both hemispheres 161.3
2140 Male, age 76, both hemispheres 160.3
Pretectal area
nTPM: 170.3
2407 Male, age 75, both hemispheres 186.3
2825 Male, age 18, unknown 184.2
2316 Male, age 76, right hemisphere 182.0
1815 Male, age 53, unknown 179.5
2667 Female, age 75, unknown 176.3
1817 Female, age 42, unknown 165.9
2224 Female, age 72, unknown 165.9
1944 Female, age 72, unknown 159.4
1816 Male, age 51, unknown 158.7
2007 Male, age 72, unknown 158.4
2273 Male, age 74, both hemispheres 157.1
Red nucleus
nTPM: 192.6
1904 Male, age 53, unknown 206.4
2588 Male, age 74, left hemisphere 205.5
2503 Female, age 72, unknown 195.7
1865 Male, age 51, unknown 195.3
2584 Male, age 75, left hemisphere 195.2
2227 Male, age 72, unknown 192.2
2823 Male, age 76, right hemisphere 191.2
2769 Male, age 72, unknown 190.5
1954 Female, age 42, unknown 189.4
1821 Female, age 72, unknown 187.5
2725 Female, age 75, unknown 185.5
2785 Male, age 18, unknown 176.5
Substantia nigra
nTPM: 179.1
2583 Male, age 75, right hemisphere 194.2
2409 Female, age 72, unknown 185.4
2699 Male, age 18, unknown 184.1
2665 Male, age 74, both hemispheres 184.0
1851 Male, age 51, unknown 183.3
2590 Female, age 75, unknown 183.1
2241 Male, age 72, unknown 178.8
1941 Male, age 53, unknown 169.4
1916 Female, age 42, unknown 166.1
1889 Female, age 72, unknown 162.6
Superior colliculus
nTPM: 181.4
1913 Female, age 42, unknown 200.2
1995 Male, age 72, unknown 191.2
2664 Male, age 75, both hemispheres 191.0
1839 Male, age 51, unknown 187.9
2587 Male, age 74, left hemisphere 185.7
1895 Male, age 76, right hemisphere 176.9
1796 Male, age 53, unknown 172.8
2668 Female, age 75, unknown 171.7
2261 Male, age 18, unknown 170.5
2087 Female, age 72, unknown 166.0
Ventral tegmental area
nTPM: 170.9
2410 Female, age 72, unknown 176.4
1942 Male, age 51, unknown 173.7
2021 Male, age 53, unknown 173.3
2223 Female, age 72, unknown 169.6
1915 Female, age 42, unknown 169.3
2218 Male, age 76, both hemispheres 163.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 190.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 190.5
Samples: 139

Max nTPM: 535.2
Min nTPM: 79.7
Std nTPM: 65.7
Median nTPM: 176.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 535.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 389.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 375.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 370.5
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 341.0
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 334.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 315.8
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 307.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 300.8
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 297.2
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 294.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 207.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 207.1
FF:10158-103A5 76 years, female 207.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 27.8
Pig sample Sample description nTPM
Midbrain
nTPM: 25.6
Samples: 4

Max nTPM: 29.5
Min nTPM: 18.5
Sample A Female 18.5
Sample B Female 25.4
Sample C Male 29.0
Sample D Male 29.5
Periaqueductal gray
nTPM: 22.8
Samples: 3

Max nTPM: 23.2
Min nTPM: 22.4
Sample B Female 22.4
Sample C Male 23.2
Sample D Male 22.9
Substantia nigra
nTPM: 26.0
Samples: 4

Max nTPM: 35.1
Min nTPM: 20.4
Sample A Female 22.6
Sample B Female 20.4
Sample C Male 25.8
Sample D Male 35.1
Superior colliculi
nTPM: 27.8
Samples: 4

Max nTPM: 31.7
Min nTPM: 24.0
Sample A Female 25.9
Sample B Female 24.0
Sample C Male 29.7
Sample D Male 31.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 49.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 49.1
Samples: 4

Max nTPM: 51.0
Min nTPM: 46.1
Sample A Male 50.8
Sample B Male 46.1
Sample C Female 48.6
Sample D Female 51.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.9
76003377 Antisense, RP_060608_02_D04, Mouse strain C57BL/6J (56 days, male) 4.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.