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ZC3H7B
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:35.7 nTPM
HPA:35.7 nTPM
GTEx:37.6 nTPM
FANTOM5:148.7 Scaled Tags Per Million
Pig:44.1 nTPM
Mouse:43.7 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 35.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 34.2
2586 Male, age 75, left hemisphere 53.0
2828 Female, age 72, unknown 38.9
2666 Male, age 74, left hemisphere 36.3
1827 Male, age 72, unknown 34.9
1870 Female, age 42, unknown 31.3
2019 Male, age 18, unknown 31.2
1830 Male, age 51, unknown 31.0
1833 Male, age 53, unknown 29.2
2411 Female, age 72, unknown 29.2
2219 Male, age 76, both hemispheres 27.2
Dorsal raphe nucleus
nTPM: 25.0
2750 Male, age 76, both hemispheres 29.7
1828 Male, age 53, unknown 26.3
2016 Female, age 72, unknown 24.9
2047 Male, age 72, unknown 23.1
2298 Female, age 72, unknown 21.0
Inferior colliculus
nTPM: 32.4
2849 Male, age 72, unknown 33.9
2097 Female, age 72, unknown 33.6
1848 Female, age 42, unknown 32.8
1890 Male, age 53, unknown 29.4
Median raphe nucleus
nTPM: 25.4
2220 Male, age 76, midline 25.4
Pedunculopontine tegmental nucleus
nTPM: 27.1
2334 Male, age 80, both hemispheres 27.7
2338 Male, age 61, both hemispheres 27.7
1921 Female, age 85, both hemispheres 26.0
Periaquaductal grey, anterior
nTPM: 33.0
2502 Female, age 75, unknown 37.3
1947 Male, age 18, unknown 32.0
1795 Male, age 51, unknown 29.8
Periaquaductal grey, dorsal
nTPM: 25.0
1831 Male, age 72, unknown 30.4
2464 Female, age 72, unknown 28.0
1840 Male, age 53, unknown 23.2
2850 Male, age 76, both hemispheres 18.3
Periaquaductal grey, lateral
nTPM: 21.1
2053 Male, age 18, unknown 26.4
2272 Male, age 74, both hemispheres 19.1
2140 Male, age 76, both hemispheres 17.8
Pretectal area
nTPM: 28.7
1816 Male, age 51, unknown 35.2
1817 Female, age 42, unknown 34.4
2007 Male, age 72, unknown 33.9
2407 Male, age 75, both hemispheres 33.1
2825 Male, age 18, unknown 31.6
1815 Male, age 53, unknown 31.4
1944 Female, age 72, unknown 31.3
2667 Female, age 75, unknown 27.4
2316 Male, age 76, right hemisphere 22.4
2224 Female, age 72, unknown 19.0
2273 Male, age 74, both hemispheres 16.1
Red nucleus
nTPM: 35.7
2584 Male, age 75, left hemisphere 46.9
2588 Male, age 74, left hemisphere 44.9
2769 Male, age 72, unknown 37.6
2227 Male, age 72, unknown 36.5
1954 Female, age 42, unknown 35.3
2823 Male, age 76, right hemisphere 35.0
1821 Female, age 72, unknown 34.4
1865 Male, age 51, unknown 33.7
2785 Male, age 18, unknown 32.4
1904 Male, age 53, unknown 30.8
2503 Female, age 72, unknown 30.7
2725 Female, age 75, unknown 30.4
Substantia nigra
nTPM: 30.4
1941 Male, age 53, unknown 42.4
2665 Male, age 74, both hemispheres 37.2
2583 Male, age 75, right hemisphere 36.4
1889 Female, age 72, unknown 32.5
2590 Female, age 75, unknown 31.0
1851 Male, age 51, unknown 28.8
1916 Female, age 42, unknown 28.4
2699 Male, age 18, unknown 27.3
2409 Female, age 72, unknown 20.5
2241 Male, age 72, unknown 19.4
Superior colliculus
nTPM: 32.3
2664 Male, age 75, both hemispheres 46.8
2668 Female, age 75, unknown 32.6
1796 Male, age 53, unknown 32.3
2087 Female, age 72, unknown 32.2
1839 Male, age 51, unknown 31.3
2261 Male, age 18, unknown 30.7
1895 Male, age 76, right hemisphere 30.3
1913 Female, age 42, unknown 30.0
1995 Male, age 72, unknown 29.2
2587 Male, age 74, left hemisphere 28.0
Ventral tegmental area
nTPM: 27.1
1942 Male, age 51, unknown 29.1
2223 Female, age 72, unknown 28.9
1915 Female, age 42, unknown 28.5
2410 Female, age 72, unknown 28.2
2021 Male, age 53, unknown 24.7
2218 Male, age 76, both hemispheres 23.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 37.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 37.6
Samples: 139

Max nTPM: 75.2
Min nTPM: 18.0
Std nTPM: 8.7
Median nTPM: 36.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 75.2
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 64.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 63.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 59.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 59.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 58.2
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 57.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 56.6
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 53.5
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 50.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 49.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 148.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 148.7
FF:10158-103A5 76 years, female 148.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 44.1
Pig sample Sample description nTPM
Midbrain
nTPM: 44.1
Samples: 4

Max nTPM: 55.3
Min nTPM: 33.1
Sample A Female 38.7
Sample B Female 33.1
Sample C Male 49.2
Sample D Male 55.3
Periaqueductal gray
nTPM: 35.6
Samples: 3

Max nTPM: 41.8
Min nTPM: 32.2
Sample B Female 32.2
Sample C Male 41.8
Sample D Male 32.9
Substantia nigra
nTPM: 35.7
Samples: 4

Max nTPM: 42.2
Min nTPM: 30.4
Sample A Female 37.8
Sample B Female 30.4
Sample C Male 42.2
Sample D Male 32.3
Superior colliculi
nTPM: 41.8
Samples: 4

Max nTPM: 50.6
Min nTPM: 32.0
Sample A Female 46.0
Sample B Female 32.0
Sample C Male 38.5
Sample D Male 50.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 43.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 43.7
Samples: 4

Max nTPM: 45.6
Min nTPM: 40.3
Sample A Male 45.6
Sample B Male 40.3
Sample C Female 44.6
Sample D Female 44.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
72001863 Antisense, RP_050915_02_D04, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.