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PMM1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:47.2 nTPM
HPA:47.2 nTPM
GTEx:46.0 nTPM
FANTOM5:27.0 Scaled Tags Per Million
Pig:28.5 nTPM
Mouse:164.3 nTPM
Allen mouse:5.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 47.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 44.4
2586 Male, age 75, left hemisphere 48.3
1827 Male, age 72, unknown 47.1
2411 Female, age 72, unknown 46.3
2828 Female, age 72, unknown 45.1
1870 Female, age 42, unknown 44.8
2019 Male, age 18, unknown 43.8
2219 Male, age 76, both hemispheres 43.1
1833 Male, age 53, unknown 42.4
1830 Male, age 51, unknown 41.9
2666 Male, age 74, left hemisphere 40.8
Dorsal raphe nucleus
nTPM: 47.2
2298 Female, age 72, unknown 52.4
2047 Male, age 72, unknown 47.6
2750 Male, age 76, both hemispheres 46.2
1828 Male, age 53, unknown 45.1
2016 Female, age 72, unknown 44.8
Inferior colliculus
nTPM: 43.1
2097 Female, age 72, unknown 44.9
1848 Female, age 42, unknown 43.2
1890 Male, age 53, unknown 42.5
2849 Male, age 72, unknown 42.0
Median raphe nucleus
nTPM: 46.6
2220 Male, age 76, midline 46.6
Pedunculopontine tegmental nucleus
nTPM: 45.9
1921 Female, age 85, both hemispheres 49.1
2334 Male, age 80, both hemispheres 45.9
2338 Male, age 61, both hemispheres 42.7
Periaquaductal grey, anterior
nTPM: 47.2
1795 Male, age 51, unknown 49.1
1947 Male, age 18, unknown 46.8
2502 Female, age 75, unknown 45.6
Periaquaductal grey, dorsal
nTPM: 43.8
1840 Male, age 53, unknown 45.7
1831 Male, age 72, unknown 44.1
2464 Female, age 72, unknown 43.1
2850 Male, age 76, both hemispheres 42.3
Periaquaductal grey, lateral
nTPM: 44.9
2272 Male, age 74, both hemispheres 46.0
2053 Male, age 18, unknown 45.0
2140 Male, age 76, both hemispheres 43.7
Pretectal area
nTPM: 46.5
1816 Male, age 51, unknown 48.9
2273 Male, age 74, both hemispheres 48.7
2007 Male, age 72, unknown 48.1
2224 Female, age 72, unknown 47.9
2667 Female, age 75, unknown 47.9
1944 Female, age 72, unknown 47.5
1817 Female, age 42, unknown 46.8
1815 Male, age 53, unknown 45.2
2825 Male, age 18, unknown 44.8
2407 Male, age 75, both hemispheres 43.4
2316 Male, age 76, right hemisphere 42.3
Red nucleus
nTPM: 43.1
1821 Female, age 72, unknown 45.1
2503 Female, age 72, unknown 44.2
2785 Male, age 18, unknown 43.9
2769 Male, age 72, unknown 43.6
2588 Male, age 74, left hemisphere 43.4
2725 Female, age 75, unknown 43.3
1904 Male, age 53, unknown 43.2
2227 Male, age 72, unknown 42.7
1954 Female, age 42, unknown 42.5
2823 Male, age 76, right hemisphere 42.3
2584 Male, age 75, left hemisphere 42.1
1865 Male, age 51, unknown 41.3
Substantia nigra
nTPM: 46.9
1916 Female, age 42, unknown 50.6
1941 Male, age 53, unknown 48.7
1851 Male, age 51, unknown 48.4
2409 Female, age 72, unknown 47.4
1889 Female, age 72, unknown 47.2
2590 Female, age 75, unknown 46.1
2583 Male, age 75, right hemisphere 45.7
2665 Male, age 74, both hemispheres 45.1
2699 Male, age 18, unknown 44.7
2241 Male, age 72, unknown 44.5
Superior colliculus
nTPM: 45.0
2261 Male, age 18, unknown 48.3
1796 Male, age 53, unknown 48.0
2087 Female, age 72, unknown 45.9
2668 Female, age 75, unknown 45.1
2664 Male, age 75, both hemispheres 44.7
1839 Male, age 51, unknown 44.6
1913 Female, age 42, unknown 44.1
2587 Male, age 74, left hemisphere 43.7
1995 Male, age 72, unknown 43.1
1895 Male, age 76, right hemisphere 42.3
Ventral tegmental area
nTPM: 46.8
1915 Female, age 42, unknown 49.8
2410 Female, age 72, unknown 47.5
1942 Male, age 51, unknown 46.9
2218 Male, age 76, both hemispheres 45.9
2021 Male, age 53, unknown 45.6
2223 Female, age 72, unknown 45.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 46.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 46.0
Samples: 139

Max nTPM: 93.4
Min nTPM: 20.7
Std nTPM: 12.3
Median nTPM: 44.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 93.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 82.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 81.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 77.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 74.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 71.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 71.2
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 69.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 69.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 68.9
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 68.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 27.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 27.0
FF:10158-103A5 76 years, female 27.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 28.5
Pig sample Sample description nTPM
Midbrain
nTPM: 28.5
Samples: 4

Max nTPM: 55.2
Min nTPM: 17.8
Sample A Female 55.2
Sample B Female 20.5
Sample C Male 20.3
Sample D Male 17.8
Periaqueductal gray
nTPM: 17.9
Samples: 3

Max nTPM: 19.8
Min nTPM: 16.9
Sample B Female 16.9
Sample C Male 17.0
Sample D Male 19.8
Substantia nigra
nTPM: 24.7
Samples: 4

Max nTPM: 28.7
Min nTPM: 16.4
Sample A Female 28.7
Sample B Female 16.4
Sample C Male 26.1
Sample D Male 27.7
Superior colliculi
nTPM: 23.2
Samples: 4

Max nTPM: 24.6
Min nTPM: 20.9
Sample A Female 24.6
Sample B Female 20.9
Sample C Male 23.9
Sample D Male 23.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 164.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 164.3
Samples: 4

Max nTPM: 182.8
Min nTPM: 151.2
Sample A Male 182.8
Sample B Male 157.3
Sample C Female 151.2
Sample D Female 165.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.6
67936010 Antisense, RP_041102_01_A04, Mouse strain C57BL/6J (56 days, male) 6.0
71735835 Antisense, RP_051010_03_C09, Mouse strain C57BL/6J (56 days, male) 5.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.