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PSMC6
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:39.2 nTPM
HPA:39.2 nTPM
GTEx:7.1 nTPM
FANTOM5:103.1 Scaled Tags Per Million
Pig:45.5 nTPM
Mouse:73.6 nTPM
Allen mouse:4.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA042823
Glial cells Low
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 39.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 38.6
2481 Female, age 94, left hemisphere 43.5
2846 Female, age 79, unknown 40.8
1857 Female, age 85, left hemisphere 38.9
2288 Male, age 75, left hemisphere 38.8
2290 Female, age 72, unknown 37.9
1854 Male, age 80, left hemisphere 37.6
1781 Male, age 74, unknown 36.7
2289 Male, age 61, right hemisphere 34.9
Claustrum
nTPM: 37.2
1956 Male, age 74, unknown 40.9
2196 Female, age 79, unknown 40.3
2198 Male, age 80, both hemispheres 39.3
2392 Female, age 94, both hemispheres 38.9
2491 Male, age 75, both hemispheres 36.8
2292 Female, age 85, both hemispheres 35.4
2284 Female, age 91, both hemispheres 35.2
2568 Male, age 61, both hemispheres 34.5
2645 Female, age 72, unknown 34.0
Globus pallidus, externus
nTPM: 38.1
2772 Female, age 79, unknown 41.8
2395 Male, age 75, both hemispheres 41.6
1996 Male, age 80, right hemisphere 37.9
2646 Male, age 61, right hemisphere 35.1
2567 Female, age 72, unknown 34.1
Globus pallidus, internus
nTPM: 39.2
2287 Male, age 75, right hemisphere 44.1
2483 Female, age 94, right hemisphere 43.3
2778 Female, age 91, both hemispheres 40.8
1818 Male, age 74, unknown 37.9
2111 Female, age 85, right hemisphere 36.7
2037 Male, age 80, right hemisphere 36.2
2566 Female, age 72, unknown 35.4
Nucleus accumbens
nTPM: 38.3
2391 Female, age 94, left hemisphere 40.7
2286 Male, age 75, left hemisphere 40.6
2698 Female, age 72, unknown 40.2
1856 Female, age 91, right hemisphere 40.0
1806 Female, age 85, left hemisphere 36.7
2824 Male, age 61, right hemisphere 36.5
1783 Male, age 74, unknown 36.4
2732 Male, age 80, right hemisphere 35.4
Nucleus basalis of Meynert
nTPM: 36.8
2484 Female, age 94, left hemisphere 38.0
2821 Male, age 75, both hemispheres 38.0
2393 Male, age 80, right hemisphere 36.1
2569 Male, age 61, both hemispheres 35.1
Nucleus of the diagonal band
nTPM: 39.2
2775 Male, age 80, right hemisphere 42.4
1812 Female, age 91, both hemispheres 41.7
2195 Female, age 85, both hemispheres 39.2
2029 Male, age 61, right hemisphere 36.5
1979 Male, age 74, unknown 36.1
Olfactory tubercle
nTPM: 38.4
1846 Male, age 80, right hemisphere 40.3
1998 Female, age 91, both hemispheres 39.4
2487 Female, age 94, left hemisphere 37.3
2856 Male, age 75, right hemisphere 36.7
Putamen
nTPM: 37.4
2482 Female, age 94, left hemisphere 42.0
2466 Female, age 79, unknown 38.3
1937 Female, age 91, right hemisphere 38.0
1829 Male, age 74, unknown 37.2
1838 Male, age 80, right hemisphere 36.8
2647 Male, age 75, left hemisphere 35.9
2489 Female, age 72, unknown 33.7
Septal nuclei
nTPM: 38.1
2031 Female, age 72, unknown 42.2
1960 Male, age 74, unknown 42.0
2629 Female, age 94, right hemisphere 38.0
2009 Female, age 91, both hemispheres 37.7
2059 Female, age 85, both hemispheres 36.2
2394 Male, age 61, left hemisphere 35.5
2199 Male, age 80, right hemisphere 35.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 7.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 6.8
Samples: 246

Max nTPM: 35.6
Min nTPM: 0.5
Std nTPM: 4.7
Median nTPM: 6.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 35.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 26.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 21.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 19.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 19.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 17.6
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 16.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 16.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 16.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 16.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 14.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 6.4
Samples: 246

Max nTPM: 19.9
Min nTPM: 0.2
Std nTPM: 3.7
Median nTPM: 5.8
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 19.9
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 19.3
GTEX-13FXS-0011-R6b-SM-5L3F7 50-59 years, male 15.3
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 15.2
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 14.4
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 14.4
GTEX-11NUK-0011-R6a-SM-DO93O 50-59 years, male 14.3
GTEX-12ZZX-0011-R6a-SM-5HL8L 40-49 years, female 14.1
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 14.0
GTEX-T6MN-0011-R6A-SM-32QP8 50-59 years, male 14.0
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 13.7
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Brain - Putamen (basal ganglia)
Average nTPM: 7.1
Samples: 205

Max nTPM: 35.3
Min nTPM: 0.9
Std nTPM: 4.7
Median nTPM: 6.3
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 35.3
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 23.9
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 22.0
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 19.5
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 18.5
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 17.4
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 17.4
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 17.3
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 16.7
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 15.9
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 15.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 103.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 72.6
FF:10164-103B2 76 years, female 72.6
Globus pallidus
Scaled Tags Per Million: 74.2
FF:10161-103A8 76 years, female 78.9
FF:10175-103C4 60 years, female 69.4
Nucleus accumbens
Scaled Tags Per Million: 86.6
FF:10037-101F1 23-56 years, mixed 86.6
Putamen
Scaled Tags Per Million: 103.1
FF:10176-103C5 60 years, female 103.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 45.5
Pig sample Sample description nTPM
Caudate
nTPM: 34.0
Samples: 4

Max nTPM: 38.9
Min nTPM: 30.6
Sample A Female 38.9
Sample B Female 30.6
Sample C Male 34.9
Sample D Male 31.7
Putamen
nTPM: 45.6
Samples: 4

Max nTPM: 56.3
Min nTPM: 37.4
Sample A Female 48.1
Sample B Female 37.4
Sample C Male 56.3
Sample D Male 40.4
Septum
nTPM: 40.5
Samples: 4

Max nTPM: 47.5
Min nTPM: 36.0
Sample A Female 41.2
Sample B Female 36.0
Sample C Male 47.5
Sample D Male 37.2
Ventral pallidum
nTPM: 39.4
Samples: 4

Max nTPM: 43.3
Min nTPM: 34.7
Sample A Female 34.7
Sample B Female 42.0
Sample C Male 43.3
Sample D Male 37.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 73.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 63.5
Samples: 4

Max nTPM: 71.2
Min nTPM: 58.1
Sample A Male 60.8
Sample B Male 58.1
Sample C Female 71.2
Sample D Female 63.7
Septum
nTPM: 73.6
Samples: 4

Max nTPM: 78.6
Min nTPM: 69.7
Sample A Male 69.7
Sample B Male 78.6
Sample C Female 75.0
Sample D Female 71.2
Ventral forebrain
nTPM: 65.8
Samples: 4

Max nTPM: 68.7
Min nTPM: 63.1
Sample A Male 68.7
Sample B Male 65.2
Sample C Female 63.1
Sample D Female 66.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 4.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 3.7
81600150 Antisense, RP_080320_01_G07, Mouse strain C57BL/6J (56 days, male) 5.3
69817420 Antisense, RP_050510_03_D02, Mouse strain C57BL/6J (56 days, male) 3.4
70919681 Antisense, RP_050713_01_H04, Mouse strain C57BL/6J (56 days, male) 2.5
73512205 Antisense, RP_050713_01_H04, Mouse strain C57BL/6J (56 days, male) 1.9
Pallidum
Expression energy: 4.0
81600150 Antisense, RP_080320_01_G07, Mouse strain C57BL/6J (56 days, male) 5.8
69817420 Antisense, RP_050510_03_D02, Mouse strain C57BL/6J (56 days, male) 3.3
70919681 Antisense, RP_050713_01_H04, Mouse strain C57BL/6J (56 days, male) 3.0
73512205 Antisense, RP_050713_01_H04, Mouse strain C57BL/6J (56 days, male) 1.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.