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SPTLC2
HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:15.3 nTPM
HPA:15.3 nTPM
GTEx:15.7 nTPM
FANTOM5:68.9 Scaled Tags Per Million
Pig:11.8 nTPM
Mouse:9.0 nTPM
Allen mouse:2.5 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 15.3
Sample id Sample description nTPM
Hippocampus
nTPM: 11.8
1855 Male, age 76, left hemisphere 13.2
1911 Female, age 85, right hemisphere 13.1
1898 Male, age 80, left hemisphere 12.4
2621 Female, age 67, right hemisphere 11.6
2529 Female, age 94, left hemisphere 11.2
2148 Female, age 91, left hemisphere 9.3
Dentate gyrus
nTPM: 12.4
2530 Female, age 94, left hemisphere 18.8
2010 Male, age 76, both hemispheres 13.5
2528 Male, age 74, both hemispheres 12.9
2246 Female, age 85, both hemispheres 11.1
2531 Female, age 67, both hemispheres 9.4
1927 Female, age 91, both hemispheres 9.0
Entorhinal gyrus
nTPM: 12.6
2117 Female, age 91, right hemisphere 17.9
1787 Male, age 76, left hemisphere 13.3
2764 Male, age 80, right hemisphere 12.5
1938 Female, age 85, left hemisphere 11.9
2613 Female, age 94, left hemisphere 10.3
2686 Male, age 75, right hemisphere 9.4
Hippocampus, CA1
nTPM: 10.7
1873 Female, age 85, both hemispheres 12.0
2082 Female, age 91, right hemisphere 11.2
2527 Male, age 74, both hemispheres 10.4
2749 Male, age 80, left hemisphere 10.3
2045 Male, age 76, both hemispheres 9.7
Hippocampus, CA2
nTPM: 12.7
1963 Male, age 80, left hemisphere 13.9
1892 Male, age 76, both hemispheres 13.4
2249 Male, age 74, both hemispheres 13.3
2113 Female, age 91, right hemisphere 12.3
2437 Female, age 94, left hemisphere 11.8
1940 Female, age 85, left hemisphere 11.2
Hippocampus, CA3
nTPM: 9.6
1891 Female, age 85, both hemispheres 15.1
1867 Male, age 76, both hemispheres 12.7
2436 Male, age 74, both hemispheres 9.0
2137 Male, age 80, left hemisphere 8.9
2861 Female, age 67, both hemispheres 6.8
2620 Female, age 94, left hemisphere 5.3
Parahippocampal cortex
nTPM: 10.8
2532 Female, age 72, left hemisphere 13.2
2018 Male, age 76, both hemispheres 12.9
2692 Male, age 74, both hemispheres 12.7
1990 Female, age 91, right hemisphere 12.5
1933 Female, age 85, both hemispheres 11.5
1850 Male, age 80, both hemispheres 10.7
2250 Female, age 67, right hemisphere 10.0
2245 Female, age 91, both hemispheres 9.6
2693 Female, age 94, both hemispheres 8.8
2622 Female, age 67, right hemisphere 6.2
Perirhinal gyrus
nTPM: 9.6
2848 Male, age 76, right hemisphere 11.8
1841 Female, age 85, right hemisphere 10.0
2521 Female, age 94, right hemisphere 8.9
1847 Female, age 91, left hemisphere 8.6
1794 Male, age 80, right hemisphere 8.5
Subiculum
nTPM: 15.3
2042 Male, age 76, both hemispheres 19.1
1901 Male, age 80, both hemispheres 17.6
2438 Female, age 94, left hemisphere 15.6
1977 Female, age 85, both hemispheres 15.0
2619 Male, age 74, both hemispheres 12.2
2729 Female, age 91, right hemisphere 12.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 15.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 15.7
Samples: 197

Max nTPM: 45.2
Min nTPM: 5.0
Std nTPM: 8.0
Median nTPM: 13.3
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 45.2
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 44.0
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 41.0
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 38.9
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 37.2
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 37.0
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 36.4
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 33.2
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 32.9
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 32.8
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 31.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 68.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 68.9
FF:10153-102I9 76 years, female 79.3
FF:10169-103B7 60 years, female 58.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 11.8
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 10.9
Samples: 4

Max nTPM: 13.6
Min nTPM: 6.9
Sample A Female 12.2
Sample B Female 11.0
Sample C Male 13.6
Sample D Male 6.9
Entorhinal cortex
nTPM: 11.0
Samples: 4

Max nTPM: 11.8
Min nTPM: 9.7
Sample A Female 10.8
Sample B Female 11.7
Sample C Male 11.8
Sample D Male 9.7
Subiculum
nTPM: 11.8
Samples: 4

Max nTPM: 12.9
Min nTPM: 11.3
Sample A Female 12.9
Sample B Female 11.3
Sample C Male 11.6
Sample D Male 11.4
Ventral hippocampus
nTPM: 11.0
Samples: 4

Max nTPM: 13.0
Min nTPM: 8.8
Sample A Female 11.3
Sample B Female 8.8
Sample C Male 13.0
Sample D Male 10.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 9.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 9.0
Samples: 4

Max nTPM: 11.7
Min nTPM: 7.5
Sample A Male 7.5
Sample B Male 8.2
Sample C Female 8.4
Sample D Female 11.7
Hippocampal formation
nTPM: 8.7
Samples: 4

Max nTPM: 10.6
Min nTPM: 7.8
Sample A Male 7.8
Sample B Male 8.5
Sample C Female 10.6
Sample D Female 8.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.5
74658175 Antisense, RP_060220_02_D03, Mouse strain C57BL/6J (56 days, male) 2.5
75692980 Antisense, RP_060220_02_D03, Mouse strain C57BL/6J (56 days, male) 1.6

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The Human Protein Atlas

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