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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:37.3 nTPM
HPA:37.3 nTPM
GTEx:22.8 nTPM
FANTOM5:24.3 Scaled Tags Per Million
Pig:51.9 nTPM
Mouse:185.0 nTPM
Allen mouse:11.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 37.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.4
1870 Female, age 42, unknown 35.1
2411 Female, age 72, unknown 34.9
2586 Male, age 75, left hemisphere 33.1
1827 Male, age 72, unknown 32.5
1830 Male, age 51, unknown 32.1
2828 Female, age 72, unknown 32.1
1833 Male, age 53, unknown 31.9
2019 Male, age 18, unknown 31.7
2666 Male, age 74, left hemisphere 31.3
2219 Male, age 76, both hemispheres 28.8
Dorsal raphe nucleus
nTPM: 33.1
2047 Male, age 72, unknown 33.9
2016 Female, age 72, unknown 33.7
2298 Female, age 72, unknown 33.4
2750 Male, age 76, both hemispheres 32.6
1828 Male, age 53, unknown 32.0
Inferior colliculus
nTPM: 31.7
2097 Female, age 72, unknown 32.7
1848 Female, age 42, unknown 32.0
2849 Male, age 72, unknown 31.1
1890 Male, age 53, unknown 31.0
Median raphe nucleus
nTPM: 31.9
2220 Male, age 76, midline 31.9
Pedunculopontine tegmental nucleus
nTPM: 37.3
2338 Male, age 61, both hemispheres 47.4
2334 Male, age 80, both hemispheres 32.4
1921 Female, age 85, both hemispheres 32.0
Periaquaductal grey, anterior
nTPM: 33.3
1947 Male, age 18, unknown 35.1
1795 Male, age 51, unknown 32.7
2502 Female, age 75, unknown 32.2
Periaquaductal grey, dorsal
nTPM: 32.8
1840 Male, age 53, unknown 33.7
2850 Male, age 76, both hemispheres 32.8
2464 Female, age 72, unknown 32.6
1831 Male, age 72, unknown 32.2
Periaquaductal grey, lateral
nTPM: 32.5
2272 Male, age 74, both hemispheres 33.1
2053 Male, age 18, unknown 32.8
2140 Male, age 76, both hemispheres 31.6
Pretectal area
nTPM: 32.3
2224 Female, age 72, unknown 35.2
2825 Male, age 18, unknown 34.7
2667 Female, age 75, unknown 34.6
2273 Male, age 74, both hemispheres 32.5
1816 Male, age 51, unknown 32.4
1817 Female, age 42, unknown 31.4
2407 Male, age 75, both hemispheres 31.2
2007 Male, age 72, unknown 31.1
1815 Male, age 53, unknown 30.9
1944 Female, age 72, unknown 30.9
2316 Male, age 76, right hemisphere 30.9
Red nucleus
nTPM: 32.7
2584 Male, age 75, left hemisphere 34.9
1954 Female, age 42, unknown 34.5
1821 Female, age 72, unknown 34.3
1904 Male, age 53, unknown 33.4
2227 Male, age 72, unknown 33.2
1865 Male, age 51, unknown 33.1
2769 Male, age 72, unknown 32.4
2503 Female, age 72, unknown 32.3
2725 Female, age 75, unknown 32.2
2823 Male, age 76, right hemisphere 31.5
2785 Male, age 18, unknown 31.3
2588 Male, age 74, left hemisphere 29.0
Substantia nigra
nTPM: 32.8
2241 Male, age 72, unknown 35.0
2590 Female, age 75, unknown 34.5
2583 Male, age 75, right hemisphere 34.3
1916 Female, age 42, unknown 34.2
1941 Male, age 53, unknown 33.4
2665 Male, age 74, both hemispheres 32.4
1851 Male, age 51, unknown 32.3
1889 Female, age 72, unknown 32.2
2699 Male, age 18, unknown 30.4
2409 Female, age 72, unknown 29.4
Superior colliculus
nTPM: 31.6
2587 Male, age 74, left hemisphere 33.3
1913 Female, age 42, unknown 32.9
1796 Male, age 53, unknown 32.6
1839 Male, age 51, unknown 32.1
1895 Male, age 76, right hemisphere 31.7
2261 Male, age 18, unknown 31.7
2087 Female, age 72, unknown 31.3
1995 Male, age 72, unknown 30.5
2664 Male, age 75, both hemispheres 29.9
2668 Female, age 75, unknown 29.4
Ventral tegmental area
nTPM: 33.0
2223 Female, age 72, unknown 34.3
1915 Female, age 42, unknown 33.4
2021 Male, age 53, unknown 33.3
1942 Male, age 51, unknown 32.7
2410 Female, age 72, unknown 32.5
2218 Male, age 76, both hemispheres 32.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 22.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 22.8
Samples: 139

Max nTPM: 68.0
Min nTPM: 8.3
Std nTPM: 7.4
Median nTPM: 21.9
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 68.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 60.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 45.1
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 42.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 35.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 33.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 33.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 32.6
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 32.1
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 31.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 31.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 24.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 24.3
FF:10158-103A5 76 years, female 24.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 51.9
Pig sample Sample description nTPM
Midbrain
nTPM: 46.8
Samples: 4

Max nTPM: 88.7
Min nTPM: 25.4
Sample A Female 88.7
Sample B Female 25.4
Sample C Male 40.1
Sample D Male 33.1
Periaqueductal gray
nTPM: 30.4
Samples: 3

Max nTPM: 32.6
Min nTPM: 26.0
Sample B Female 26.0
Sample C Male 32.6
Sample D Male 32.6
Substantia nigra
nTPM: 51.9
Samples: 4

Max nTPM: 56.5
Min nTPM: 48.9
Sample A Female 56.5
Sample B Female 48.9
Sample C Male 51.0
Sample D Male 51.0
Superior colliculi
nTPM: 51.9
Samples: 4

Max nTPM: 68.1
Min nTPM: 40.1
Sample A Female 51.4
Sample B Female 68.1
Sample C Male 47.9
Sample D Male 40.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 185.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 185.0
Samples: 4

Max nTPM: 188.9
Min nTPM: 182.2
Sample A Male 182.2
Sample B Male 182.3
Sample C Female 186.7
Sample D Female 188.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 11.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.3
69736118 Antisense, RP_050503_04_C02, Mouse strain C57BL/6J (56 days, male) 11.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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