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PSMC1
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:49.5 nTPM
HPA:49.5 nTPM
GTEx:47.9 nTPM
FANTOM5:140.6 Scaled Tags Per Million
Pig:47.2 nTPM
Mouse:164.5 nTPM
Allen mouse:5.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA000872Antibody HPA016885
Glial cells LowNot detected
Neuronal cells LowMedium




HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 49.5
Sample id Sample description nTPM
Hippocampus
nTPM: 46.9
1898 Male, age 80, left hemisphere 52.1
1855 Male, age 76, left hemisphere 47.3
2529 Female, age 94, left hemisphere 47.1
2148 Female, age 91, left hemisphere 46.0
2621 Female, age 67, right hemisphere 45.1
1911 Female, age 85, right hemisphere 43.9
Dentate gyrus
nTPM: 46.3
2528 Male, age 74, both hemispheres 49.4
1927 Female, age 91, both hemispheres 49.1
2010 Male, age 76, both hemispheres 47.7
2530 Female, age 94, left hemisphere 44.2
2246 Female, age 85, both hemispheres 43.9
2531 Female, age 67, both hemispheres 43.5
Entorhinal gyrus
nTPM: 46.5
2764 Male, age 80, right hemisphere 49.6
1938 Female, age 85, left hemisphere 48.2
1787 Male, age 76, left hemisphere 47.7
2117 Female, age 91, right hemisphere 45.4
2686 Male, age 75, right hemisphere 44.4
2613 Female, age 94, left hemisphere 43.5
Hippocampus, CA1
nTPM: 48.5
2749 Male, age 80, left hemisphere 55.3
1873 Female, age 85, both hemispheres 48.6
2527 Male, age 74, both hemispheres 47.3
2045 Male, age 76, both hemispheres 46.4
2082 Female, age 91, right hemisphere 44.7
Hippocampus, CA2
nTPM: 48.4
1892 Male, age 76, both hemispheres 52.5
1963 Male, age 80, left hemisphere 51.4
2249 Male, age 74, both hemispheres 47.2
1940 Female, age 85, left hemisphere 47.0
2113 Female, age 91, right hemisphere 46.4
2437 Female, age 94, left hemisphere 46.1
Hippocampus, CA3
nTPM: 47.1
2137 Male, age 80, left hemisphere 51.7
1867 Male, age 76, both hemispheres 50.1
1891 Female, age 85, both hemispheres 46.8
2436 Male, age 74, both hemispheres 45.8
2620 Female, age 94, left hemisphere 44.5
2861 Female, age 67, both hemispheres 44.0
Parahippocampal cortex
nTPM: 46.1
1850 Male, age 80, both hemispheres 54.2
1990 Female, age 91, right hemisphere 48.0
1933 Female, age 85, both hemispheres 46.0
2018 Male, age 76, both hemispheres 45.8
2245 Female, age 91, both hemispheres 45.4
2532 Female, age 72, left hemisphere 45.2
2250 Female, age 67, right hemisphere 44.9
2692 Male, age 74, both hemispheres 44.5
2693 Female, age 94, both hemispheres 43.9
2622 Female, age 67, right hemisphere 43.4
Perirhinal gyrus
nTPM: 49.5
1847 Female, age 91, left hemisphere 52.2
1794 Male, age 80, right hemisphere 51.5
1841 Female, age 85, right hemisphere 49.7
2848 Male, age 76, right hemisphere 47.5
2521 Female, age 94, right hemisphere 46.7
Subiculum
nTPM: 46.2
1977 Female, age 85, both hemispheres 48.2
1901 Male, age 80, both hemispheres 47.8
2619 Male, age 74, both hemispheres 46.4
2729 Female, age 91, right hemisphere 45.5
2042 Male, age 76, both hemispheres 44.8
2438 Female, age 94, left hemisphere 44.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 47.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 47.9
Samples: 197

Max nTPM: 106.2
Min nTPM: 31.2
Std nTPM: 11.1
Median nTPM: 45.1
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 106.2
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 86.0
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 80.6
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 76.3
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 72.4
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 71.4
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 70.8
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 69.6
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 67.7
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 67.6
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 66.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 140.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 140.6
FF:10169-103B7 60 years, female 197.7
FF:10153-102I9 76 years, female 83.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 47.2
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 47.2
Samples: 4

Max nTPM: 61.4
Min nTPM: 39.3
Sample A Female 61.4
Sample B Female 48.4
Sample C Male 39.8
Sample D Male 39.3
Entorhinal cortex
nTPM: 39.1
Samples: 4

Max nTPM: 44.5
Min nTPM: 34.0
Sample A Female 44.5
Sample B Female 42.0
Sample C Male 36.0
Sample D Male 34.0
Subiculum
nTPM: 38.8
Samples: 4

Max nTPM: 45.2
Min nTPM: 35.2
Sample A Female 45.2
Sample B Female 36.1
Sample C Male 35.2
Sample D Male 38.7
Ventral hippocampus
nTPM: 43.0
Samples: 4

Max nTPM: 48.8
Min nTPM: 29.5
Sample A Female 47.5
Sample B Female 29.5
Sample C Male 46.3
Sample D Male 48.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 164.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 155.7
Samples: 4

Max nTPM: 162.7
Min nTPM: 146.8
Sample A Male 146.8
Sample B Male 162.3
Sample C Female 162.7
Sample D Female 151.1
Hippocampal formation
nTPM: 164.5
Samples: 4

Max nTPM: 184.1
Min nTPM: 145.1
Sample A Male 184.1
Sample B Male 162.9
Sample C Female 166.0
Sample D Female 145.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 5.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 5.5
71764207 Antisense, RP_050921_03_D09, Mouse strain C57BL/6J (56 days, male) 5.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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