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CHD8
HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.1 nTPM
HPA:11.1 nTPM
GTEx:10.4 nTPM
FANTOM5:26.9 Scaled Tags Per Million
Pig:21.6 nTPM
Mouse:32.7 nTPM
Allen mouse:5.7 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 11.1
Sample id Sample description nTPM
Hippocampus
nTPM: 10.3
2529 Female, age 94, left hemisphere 11.8
2148 Female, age 91, left hemisphere 11.1
2621 Female, age 67, right hemisphere 10.6
1898 Male, age 80, left hemisphere 9.9
1855 Male, age 76, left hemisphere 9.4
1911 Female, age 85, right hemisphere 8.9
Dentate gyrus
nTPM: 9.7
1927 Female, age 91, both hemispheres 10.3
2528 Male, age 74, both hemispheres 10.0
2531 Female, age 67, both hemispheres 10.0
2010 Male, age 76, both hemispheres 9.5
2246 Female, age 85, both hemispheres 9.3
2530 Female, age 94, left hemisphere 9.0
Entorhinal gyrus
nTPM: 10.9
1787 Male, age 76, left hemisphere 11.4
2117 Female, age 91, right hemisphere 11.4
1938 Female, age 85, left hemisphere 11.2
2764 Male, age 80, right hemisphere 10.8
2613 Female, age 94, left hemisphere 10.6
2686 Male, age 75, right hemisphere 10.4
Hippocampus, CA1
nTPM: 10.1
2749 Male, age 80, left hemisphere 11.1
1873 Female, age 85, both hemispheres 10.6
2527 Male, age 74, both hemispheres 10.5
2045 Male, age 76, both hemispheres 9.3
2082 Female, age 91, right hemisphere 8.8
Hippocampus, CA2
nTPM: 10.1
1963 Male, age 80, left hemisphere 11.8
1892 Male, age 76, both hemispheres 11.5
1940 Female, age 85, left hemisphere 9.6
2113 Female, age 91, right hemisphere 9.3
2249 Male, age 74, both hemispheres 9.3
2437 Female, age 94, left hemisphere 9.1
Hippocampus, CA3
nTPM: 10.2
2137 Male, age 80, left hemisphere 11.9
2861 Female, age 67, both hemispheres 10.9
1891 Female, age 85, both hemispheres 10.1
1867 Male, age 76, both hemispheres 9.6
2436 Male, age 74, both hemispheres 9.6
2620 Female, age 94, left hemisphere 9.2
Parahippocampal cortex
nTPM: 10.3
2245 Female, age 91, both hemispheres 11.5
1990 Female, age 91, right hemisphere 10.6
2692 Male, age 74, both hemispheres 10.6
1933 Female, age 85, both hemispheres 10.5
1850 Male, age 80, both hemispheres 10.4
2622 Female, age 67, right hemisphere 10.4
2250 Female, age 67, right hemisphere 10.0
2532 Female, age 72, left hemisphere 9.8
2693 Female, age 94, both hemispheres 9.8
2018 Male, age 76, both hemispheres 9.1
Perirhinal gyrus
nTPM: 11.1
1841 Female, age 85, right hemisphere 11.5
1847 Female, age 91, left hemisphere 11.5
2848 Male, age 76, right hemisphere 11.1
1794 Male, age 80, right hemisphere 11.0
2521 Female, age 94, right hemisphere 10.5
Subiculum
nTPM: 10.5
2438 Female, age 94, left hemisphere 12.4
2619 Male, age 74, both hemispheres 11.2
1977 Female, age 85, both hemispheres 11.0
2729 Female, age 91, right hemisphere 10.4
1901 Male, age 80, both hemispheres 10.2
2042 Male, age 76, both hemispheres 7.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 10.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 10.4
Samples: 197

Max nTPM: 19.0
Min nTPM: 3.6
Std nTPM: 2.2
Median nTPM: 10.3
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 19.0
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 18.1
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 17.2
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 15.6
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 15.4
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 15.3
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 14.9
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 14.6
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 14.4
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 14.3
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 14.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 26.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 26.9
FF:10153-102I9 76 years, female 29.7
FF:10169-103B7 60 years, female 24.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 21.6
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 21.2
Samples: 4

Max nTPM: 23.4
Min nTPM: 17.2
Sample A Female 22.7
Sample B Female 21.6
Sample C Male 23.4
Sample D Male 17.2
Entorhinal cortex
nTPM: 20.3
Samples: 4

Max nTPM: 22.5
Min nTPM: 18.7
Sample A Female 22.5
Sample B Female 19.7
Sample C Male 20.2
Sample D Male 18.7
Subiculum
nTPM: 21.1
Samples: 4

Max nTPM: 24.4
Min nTPM: 18.7
Sample A Female 24.4
Sample B Female 20.1
Sample C Male 21.2
Sample D Male 18.7
Ventral hippocampus
nTPM: 21.6
Samples: 4

Max nTPM: 25.1
Min nTPM: 17.9
Sample A Female 20.7
Sample B Female 17.9
Sample C Male 25.1
Sample D Male 22.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 32.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 32.7
Samples: 4

Max nTPM: 40.4
Min nTPM: 28.4
Sample A Male 31.2
Sample B Male 28.4
Sample C Female 30.6
Sample D Female 40.4
Hippocampal formation
nTPM: 26.9
Samples: 4

Max nTPM: 31.1
Min nTPM: 22.1
Sample A Male 24.9
Sample B Male 31.1
Sample C Female 29.3
Sample D Female 22.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 5.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 5.7
71735072 Antisense, RP_050719_04_F12, Mouse strain C57BL/6J (56 days, male) 10.0
68844247 Antisense, RP_050222_01_B12, Mouse strain C57BL/6J (56 days, male) 7.5
71211471 Antisense, RP_050816_01_F07, Mouse strain C57BL/6J (56 days, male) 4.6
70920099 Antisense, RP_050713_02_F09, Mouse strain C57BL/6J (56 days, male) 0.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.