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PLTP
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:152.2 nTPM
HPA:152.2 nTPM
GTEx:79.2 nTPM
FANTOM5:86.8 Scaled Tags Per Million
Pig:208.7 nTPM
Mouse:73.3 nTPM
Allen mouse:6.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 152.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 85.7
2828 Female, age 72, unknown 105.0
1827 Male, age 72, unknown 88.6
1870 Female, age 42, unknown 88.4
2586 Male, age 75, left hemisphere 87.9
1833 Male, age 53, unknown 87.1
1830 Male, age 51, unknown 84.0
2019 Male, age 18, unknown 81.2
2411 Female, age 72, unknown 80.4
2666 Male, age 74, left hemisphere 78.7
2219 Male, age 76, both hemispheres 76.2
Dorsal raphe nucleus
nTPM: 130.8
2298 Female, age 72, unknown 178.6
2016 Female, age 72, unknown 162.7
1828 Male, age 53, unknown 127.1
2047 Male, age 72, unknown 103.2
2750 Male, age 76, both hemispheres 82.4
Inferior colliculus
nTPM: 93.0
2849 Male, age 72, unknown 96.3
1848 Female, age 42, unknown 93.8
1890 Male, age 53, unknown 92.3
2097 Female, age 72, unknown 89.6
Median raphe nucleus
nTPM: 85.5
2220 Male, age 76, midline 85.5
Pedunculopontine tegmental nucleus
nTPM: 110.3
2338 Male, age 61, both hemispheres 163.3
1921 Female, age 85, both hemispheres 84.5
2334 Male, age 80, both hemispheres 83.3
Periaquaductal grey, anterior
nTPM: 113.4
1795 Male, age 51, unknown 139.9
2502 Female, age 75, unknown 100.4
1947 Male, age 18, unknown 99.8
Periaquaductal grey, dorsal
nTPM: 131.7
2850 Male, age 76, both hemispheres 164.3
1840 Male, age 53, unknown 142.5
1831 Male, age 72, unknown 115.5
2464 Female, age 72, unknown 104.4
Periaquaductal grey, lateral
nTPM: 152.2
2272 Male, age 74, both hemispheres 189.6
2140 Male, age 76, both hemispheres 142.3
2053 Male, age 18, unknown 124.7
Pretectal area
nTPM: 106.1
2273 Male, age 74, both hemispheres 184.6
2224 Female, age 72, unknown 134.2
2825 Male, age 18, unknown 109.7
2667 Female, age 75, unknown 106.7
2407 Male, age 75, both hemispheres 100.8
1944 Female, age 72, unknown 92.2
2316 Male, age 76, right hemisphere 91.6
1815 Male, age 53, unknown 90.4
1816 Male, age 51, unknown 90.2
1817 Female, age 42, unknown 86.8
2007 Male, age 72, unknown 80.3
Red nucleus
nTPM: 89.2
2725 Female, age 75, unknown 101.3
2769 Male, age 72, unknown 96.0
2227 Male, age 72, unknown 95.2
2503 Female, age 72, unknown 92.0
1821 Female, age 72, unknown 91.2
2823 Male, age 76, right hemisphere 90.1
1904 Male, age 53, unknown 87.9
1865 Male, age 51, unknown 85.9
2584 Male, age 75, left hemisphere 85.9
1954 Female, age 42, unknown 85.2
2785 Male, age 18, unknown 80.7
2588 Male, age 74, left hemisphere 78.8
Substantia nigra
nTPM: 97.3
2699 Male, age 18, unknown 138.5
1916 Female, age 42, unknown 103.2
2590 Female, age 75, unknown 99.8
1851 Male, age 51, unknown 98.2
2409 Female, age 72, unknown 94.3
1889 Female, age 72, unknown 88.5
2241 Male, age 72, unknown 88.4
1941 Male, age 53, unknown 87.8
2665 Male, age 74, both hemispheres 87.7
2583 Male, age 75, right hemisphere 86.7
Superior colliculus
nTPM: 101.7
1995 Male, age 72, unknown 145.0
1913 Female, age 42, unknown 110.2
2587 Male, age 74, left hemisphere 104.2
2664 Male, age 75, both hemispheres 102.9
1796 Male, age 53, unknown 101.4
2261 Male, age 18, unknown 99.7
2087 Female, age 72, unknown 93.6
1839 Male, age 51, unknown 93.4
2668 Female, age 75, unknown 86.5
1895 Male, age 76, right hemisphere 80.2
Ventral tegmental area
nTPM: 95.6
1915 Female, age 42, unknown 107.2
2021 Male, age 53, unknown 100.0
1942 Male, age 51, unknown 96.2
2218 Male, age 76, both hemispheres 93.3
2410 Female, age 72, unknown 91.6
2223 Female, age 72, unknown 85.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 79.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 79.2
Samples: 139

Max nTPM: 218.7
Min nTPM: 7.4
Std nTPM: 39.5
Median nTPM: 74.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 218.7
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 211.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 210.8
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 161.1
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 161.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 157.5
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 147.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 145.1
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 142.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 141.1
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 138.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 86.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 86.8
FF:10158-103A5 76 years, female 86.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 208.7
Pig sample Sample description nTPM
Midbrain
nTPM: 117.7
Samples: 4

Max nTPM: 186.1
Min nTPM: 80.3
Sample A Female 186.1
Sample B Female 116.6
Sample C Male 80.3
Sample D Male 87.7
Periaqueductal gray
nTPM: 156.1
Samples: 3

Max nTPM: 197.7
Min nTPM: 124.6
Sample B Female 124.6
Sample C Male 197.7
Sample D Male 145.9
Substantia nigra
nTPM: 173.6
Samples: 4

Max nTPM: 259.4
Min nTPM: 140.1
Sample A Female 140.1
Sample B Female 259.4
Sample C Male 150.2
Sample D Male 144.5
Superior colliculi
nTPM: 208.7
Samples: 4

Max nTPM: 340.7
Min nTPM: 87.1
Sample A Female 302.0
Sample B Female 340.7
Sample C Male 87.1
Sample D Male 105.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 73.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 73.3
Samples: 4

Max nTPM: 86.3
Min nTPM: 65.7
Sample A Male 86.3
Sample B Male 67.9
Sample C Female 65.7
Sample D Female 73.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.4
74581394 Antisense, RP_060117_02_C03, Mouse strain C57BL/6J (56 days, male) 9.5
68269057 Antisense, RP_041208_01_G08, Mouse strain C57BL/6J (56 days, male) 3.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.