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PCIF1
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni
Consensus:20.4 nTPM
HPA:20.4 nTPM
GTEx:19.7 nTPM
FANTOM5:24.2 Scaled Tags Per Million
Pig:7.8 nTPM
Mouse:15.8 nTPM
Allen mouse:0.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA049517
Glial cells Low
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 20.4
Sample id Sample description nTPM
Hippocampus
nTPM: 18.4
2148 Female, age 91, left hemisphere 20.0
2529 Female, age 94, left hemisphere 19.4
2621 Female, age 67, right hemisphere 18.8
1911 Female, age 85, right hemisphere 18.5
1855 Male, age 76, left hemisphere 16.9
1898 Male, age 80, left hemisphere 16.9
Dentate gyrus
nTPM: 18.8
2531 Female, age 67, both hemispheres 20.5
2528 Male, age 74, both hemispheres 20.1
2530 Female, age 94, left hemisphere 19.3
2246 Female, age 85, both hemispheres 18.6
1927 Female, age 91, both hemispheres 17.6
2010 Male, age 76, both hemispheres 16.6
Entorhinal gyrus
nTPM: 20.4
2613 Female, age 94, left hemisphere 22.1
2117 Female, age 91, right hemisphere 21.2
2764 Male, age 80, right hemisphere 20.8
2686 Male, age 75, right hemisphere 20.0
1787 Male, age 76, left hemisphere 19.5
1938 Female, age 85, left hemisphere 18.8
Hippocampus, CA1
nTPM: 17.7
2082 Female, age 91, right hemisphere 20.1
2527 Male, age 74, both hemispheres 18.4
1873 Female, age 85, both hemispheres 17.0
2045 Male, age 76, both hemispheres 16.8
2749 Male, age 80, left hemisphere 16.2
Hippocampus, CA2
nTPM: 18.3
2437 Female, age 94, left hemisphere 19.4
2113 Female, age 91, right hemisphere 19.2
1940 Female, age 85, left hemisphere 18.3
2249 Male, age 74, both hemispheres 18.3
1963 Male, age 80, left hemisphere 18.0
1892 Male, age 76, both hemispheres 16.4
Hippocampus, CA3
nTPM: 18.9
2620 Female, age 94, left hemisphere 22.1
1891 Female, age 85, both hemispheres 19.4
2861 Female, age 67, both hemispheres 19.3
2137 Male, age 80, left hemisphere 17.7
2436 Male, age 74, both hemispheres 17.6
1867 Male, age 76, both hemispheres 17.4
Parahippocampal cortex
nTPM: 18.8
2532 Female, age 72, left hemisphere 20.6
1990 Female, age 91, right hemisphere 19.7
2245 Female, age 91, both hemispheres 19.4
2692 Male, age 74, both hemispheres 19.2
2693 Female, age 94, both hemispheres 19.2
2622 Female, age 67, right hemisphere 18.7
1850 Male, age 80, both hemispheres 18.0
1933 Female, age 85, both hemispheres 17.9
2250 Female, age 67, right hemisphere 17.7
2018 Male, age 76, both hemispheres 17.4
Perirhinal gyrus
nTPM: 18.4
2848 Male, age 76, right hemisphere 19.3
1794 Male, age 80, right hemisphere 18.9
1847 Female, age 91, left hemisphere 18.3
1841 Female, age 85, right hemisphere 18.0
2521 Female, age 94, right hemisphere 17.7
Subiculum
nTPM: 19.2
1977 Female, age 85, both hemispheres 20.4
2619 Male, age 74, both hemispheres 20.2
2729 Female, age 91, right hemisphere 19.4
1901 Male, age 80, both hemispheres 19.1
2042 Male, age 76, both hemispheres 18.3
2438 Female, age 94, left hemisphere 17.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 19.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 19.7
Samples: 197

Max nTPM: 35.6
Min nTPM: 9.4
Std nTPM: 4.0
Median nTPM: 19.3
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 35.6
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 31.9
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 30.8
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 30.7
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 30.0
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 29.3
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 28.6
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 26.9
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 26.6
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 26.1
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 25.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 24.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 24.2
FF:10153-102I9 76 years, female 29.5
FF:10169-103B7 60 years, female 18.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 7.8
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 7.8
Samples: 4

Max nTPM: 9.1
Min nTPM: 6.2
Sample A Female 9.1
Sample B Female 7.0
Sample C Male 8.9
Sample D Male 6.2
Entorhinal cortex
nTPM: 6.6
Samples: 4

Max nTPM: 6.9
Min nTPM: 5.9
Sample A Female 6.9
Sample B Female 6.8
Sample C Male 6.6
Sample D Male 5.9
Subiculum
nTPM: 7.1
Samples: 4

Max nTPM: 8.9
Min nTPM: 5.7
Sample A Female 8.9
Sample B Female 7.0
Sample C Male 6.7
Sample D Male 5.7
Ventral hippocampus
nTPM: 7.7
Samples: 4

Max nTPM: 10.1
Min nTPM: 5.8
Sample A Female 7.2
Sample B Female 5.8
Sample C Male 10.1
Sample D Male 7.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 15.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 15.8
Samples: 4

Max nTPM: 17.3
Min nTPM: 15.3
Sample A Male 17.3
Sample B Male 15.3
Sample C Female 15.4
Sample D Female 15.3
Hippocampal formation
nTPM: 15.1
Samples: 4

Max nTPM: 15.6
Min nTPM: 14.8
Sample A Male 15.0
Sample B Male 14.8
Sample C Female 15.6
Sample D Female 15.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.8
70528647 Antisense, RP_050623_03_A12, Mouse strain C57BL/6J (56 days, male) 0.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
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