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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:15.9 nTPM
HPA:15.9 nTPM
GTEx:10.0 nTPM
FANTOM5:27.2 Scaled Tags Per Million
Pig:13.5 nTPM
Mouse:38.1 nTPM
Allen mouse:0.9 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 15.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 14.7
2411 Female, age 72, unknown 16.5
1870 Female, age 42, unknown 16.3
1833 Male, age 53, unknown 15.1
2019 Male, age 18, unknown 15.1
1827 Male, age 72, unknown 14.7
1830 Male, age 51, unknown 14.6
2219 Male, age 76, both hemispheres 14.3
2828 Female, age 72, unknown 14.2
2666 Male, age 74, left hemisphere 13.4
2586 Male, age 75, left hemisphere 12.7
Dorsal raphe nucleus
nTPM: 15.3
2298 Female, age 72, unknown 16.9
2016 Female, age 72, unknown 15.4
2047 Male, age 72, unknown 15.1
1828 Male, age 53, unknown 15.0
2750 Male, age 76, both hemispheres 14.2
Inferior colliculus
nTPM: 15.4
2097 Female, age 72, unknown 16.6
1848 Female, age 42, unknown 15.5
1890 Male, age 53, unknown 15.0
2849 Male, age 72, unknown 14.3
Median raphe nucleus
nTPM: 13.7
2220 Male, age 76, midline 13.7
Pedunculopontine tegmental nucleus
nTPM: 15.5
1921 Female, age 85, both hemispheres 16.4
2334 Male, age 80, both hemispheres 15.3
2338 Male, age 61, both hemispheres 14.8
Periaquaductal grey, anterior
nTPM: 14.4
1947 Male, age 18, unknown 15.4
1795 Male, age 51, unknown 14.5
2502 Female, age 75, unknown 13.4
Periaquaductal grey, dorsal
nTPM: 14.8
2464 Female, age 72, unknown 15.8
1840 Male, age 53, unknown 14.8
2850 Male, age 76, both hemispheres 14.5
1831 Male, age 72, unknown 14.0
Periaquaductal grey, lateral
nTPM: 15.9
2272 Male, age 74, both hemispheres 17.2
2053 Male, age 18, unknown 15.4
2140 Male, age 76, both hemispheres 15.2
Pretectal area
nTPM: 15.2
2224 Female, age 72, unknown 16.7
2316 Male, age 76, right hemisphere 16.1
2273 Male, age 74, both hemispheres 16.0
1816 Male, age 51, unknown 15.4
2825 Male, age 18, unknown 15.2
2007 Male, age 72, unknown 14.8
1815 Male, age 53, unknown 14.7
1944 Female, age 72, unknown 14.7
1817 Female, age 42, unknown 14.5
2407 Male, age 75, both hemispheres 14.5
2667 Female, age 75, unknown 14.4
Red nucleus
nTPM: 14.7
2503 Female, age 72, unknown 16.2
1821 Female, age 72, unknown 16.1
1954 Female, age 42, unknown 15.3
2227 Male, age 72, unknown 15.0
2725 Female, age 75, unknown 15.0
2769 Male, age 72, unknown 15.0
1904 Male, age 53, unknown 14.6
2785 Male, age 18, unknown 14.3
1865 Male, age 51, unknown 14.1
2823 Male, age 76, right hemisphere 13.7
2588 Male, age 74, left hemisphere 13.6
2584 Male, age 75, left hemisphere 13.2
Substantia nigra
nTPM: 15.4
2241 Male, age 72, unknown 18.4
2409 Female, age 72, unknown 16.3
2590 Female, age 75, unknown 16.3
2583 Male, age 75, right hemisphere 15.8
1889 Female, age 72, unknown 15.2
1941 Male, age 53, unknown 14.7
1851 Male, age 51, unknown 14.6
2665 Male, age 74, both hemispheres 14.5
2699 Male, age 18, unknown 14.3
1916 Female, age 42, unknown 14.2
Superior colliculus
nTPM: 14.9
1796 Male, age 53, unknown 15.8
1895 Male, age 76, right hemisphere 15.6
2668 Female, age 75, unknown 15.6
2261 Male, age 18, unknown 15.2
1839 Male, age 51, unknown 15.0
1913 Female, age 42, unknown 15.0
2587 Male, age 74, left hemisphere 14.9
2087 Female, age 72, unknown 14.8
1995 Male, age 72, unknown 14.0
2664 Male, age 75, both hemispheres 13.0
Ventral tegmental area
nTPM: 15.2
1942 Male, age 51, unknown 16.0
1915 Female, age 42, unknown 15.6
2021 Male, age 53, unknown 15.3
2223 Female, age 72, unknown 15.3
2410 Female, age 72, unknown 15.0
2218 Male, age 76, both hemispheres 14.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 10.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.0
Samples: 139

Max nTPM: 17.9
Min nTPM: 6.7
Std nTPM: 1.9
Median nTPM: 9.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 17.9
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 14.9
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 14.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 14.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 14.7
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 14.1
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 14.0
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 13.8
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 13.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 13.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 13.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 27.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 27.2
FF:10158-103A5 76 years, female 27.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 13.5
Pig sample Sample description nTPM
Midbrain
nTPM: 12.4
Samples: 4

Max nTPM: 16.5
Min nTPM: 9.4
Sample A Female 11.7
Sample B Female 9.4
Sample C Male 16.5
Sample D Male 12.0
Periaqueductal gray
nTPM: 10.3
Samples: 3

Max nTPM: 11.2
Min nTPM: 9.7
Sample B Female 10.1
Sample C Male 11.2
Sample D Male 9.7
Substantia nigra
nTPM: 11.5
Samples: 4

Max nTPM: 12.9
Min nTPM: 10.2
Sample A Female 12.2
Sample B Female 10.7
Sample C Male 12.9
Sample D Male 10.2
Superior colliculi
nTPM: 13.6
Samples: 4

Max nTPM: 16.1
Min nTPM: 12.3
Sample A Female 12.3
Sample B Female 12.7
Sample C Male 16.1
Sample D Male 13.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 38.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 38.2
Samples: 4

Max nTPM: 40.2
Min nTPM: 36.1
Sample A Male 36.1
Sample B Male 37.4
Sample C Female 38.9
Sample D Female 40.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
69262116 Antisense, RP_050224_01_B01, Mouse strain C57BL/6J (56 days, male) 0.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.