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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Low
RNA expressioni
Consensus:19.9 nTPM
HPA:19.9 nTPM
GTEx:16.8 nTPM
FANTOM5:56.1 Scaled Tags Per Million
Pig:62.1 nTPM
Mouse:15.6 nTPM
Allen mouse:4.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA003335
Glial cells Medium
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 19.9
Sample id Sample description nTPM
Hippocampus
nTPM: 16.9
1911 Female, age 85, right hemisphere 19.5
1898 Male, age 80, left hemisphere 18.9
2621 Female, age 67, right hemisphere 16.9
2148 Female, age 91, left hemisphere 15.7
2529 Female, age 94, left hemisphere 15.7
1855 Male, age 76, left hemisphere 14.6
Dentate gyrus
nTPM: 16.2
1927 Female, age 91, both hemispheres 19.3
2531 Female, age 67, both hemispheres 17.4
2010 Male, age 76, both hemispheres 16.7
2528 Male, age 74, both hemispheres 15.8
2246 Female, age 85, both hemispheres 15.5
2530 Female, age 94, left hemisphere 12.3
Entorhinal gyrus
nTPM: 13.1
1938 Female, age 85, left hemisphere 15.1
2686 Male, age 75, right hemisphere 13.7
2117 Female, age 91, right hemisphere 13.1
2764 Male, age 80, right hemisphere 13.1
2613 Female, age 94, left hemisphere 11.8
1787 Male, age 76, left hemisphere 11.5
Hippocampus, CA1
nTPM: 19.9
2749 Male, age 80, left hemisphere 29.7
1873 Female, age 85, both hemispheres 21.0
2527 Male, age 74, both hemispheres 19.9
2045 Male, age 76, both hemispheres 15.6
2082 Female, age 91, right hemisphere 13.3
Hippocampus, CA2
nTPM: 14.9
2249 Male, age 74, both hemispheres 19.9
1963 Male, age 80, left hemisphere 16.7
1892 Male, age 76, both hemispheres 15.6
2113 Female, age 91, right hemisphere 13.0
1940 Female, age 85, left hemisphere 12.3
2437 Female, age 94, left hemisphere 11.8
Hippocampus, CA3
nTPM: 18.9
2137 Male, age 80, left hemisphere 27.7
2436 Male, age 74, both hemispheres 26.3
1891 Female, age 85, both hemispheres 15.7
1867 Male, age 76, both hemispheres 15.3
2861 Female, age 67, both hemispheres 14.9
2620 Female, age 94, left hemisphere 13.8
Parahippocampal cortex
nTPM: 14.3
2245 Female, age 91, both hemispheres 16.9
1933 Female, age 85, both hemispheres 16.2
1850 Male, age 80, both hemispheres 15.6
2250 Female, age 67, right hemisphere 15.6
2693 Female, age 94, both hemispheres 15.6
2622 Female, age 67, right hemisphere 13.9
1990 Female, age 91, right hemisphere 12.8
2532 Female, age 72, left hemisphere 12.4
2692 Male, age 74, both hemispheres 12.1
2018 Male, age 76, both hemispheres 11.6
Perirhinal gyrus
nTPM: 15.2
1841 Female, age 85, right hemisphere 16.9
1847 Female, age 91, left hemisphere 15.6
1794 Male, age 80, right hemisphere 15.5
2848 Male, age 76, right hemisphere 14.4
2521 Female, age 94, right hemisphere 13.8
Subiculum
nTPM: 13.9
1901 Male, age 80, both hemispheres 17.6
1977 Female, age 85, both hemispheres 15.3
2729 Female, age 91, right hemisphere 14.6
2042 Male, age 76, both hemispheres 12.8
2438 Female, age 94, left hemisphere 11.5
2619 Male, age 74, both hemispheres 11.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 16.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 16.8
Samples: 197

Max nTPM: 29.7
Min nTPM: 8.4
Std nTPM: 4.2
Median nTPM: 16.1
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 29.7
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 28.6
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 28.5
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 26.9
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 26.7
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 26.4
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 26.4
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 26.2
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 26.2
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 24.9
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 24.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 56.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 56.1
FF:10169-103B7 60 years, female 62.7
FF:10153-102I9 76 years, female 49.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 62.1
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 62.1
Samples: 4

Max nTPM: 75.1
Min nTPM: 51.5
Sample A Female 75.1
Sample B Female 69.5
Sample C Male 52.1
Sample D Male 51.5
Entorhinal cortex
nTPM: 49.4
Samples: 4

Max nTPM: 53.8
Min nTPM: 44.3
Sample A Female 49.8
Sample B Female 53.8
Sample C Male 49.8
Sample D Male 44.3
Subiculum
nTPM: 52.4
Samples: 4

Max nTPM: 63.7
Min nTPM: 44.9
Sample A Female 63.7
Sample B Female 49.4
Sample C Male 51.4
Sample D Male 44.9
Ventral hippocampus
nTPM: 57.0
Samples: 4

Max nTPM: 67.4
Min nTPM: 50.5
Sample A Female 67.4
Sample B Female 50.5
Sample C Male 52.2
Sample D Male 57.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 15.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 15.6
Samples: 4

Max nTPM: 17.9
Min nTPM: 12.8
Sample A Male 12.8
Sample B Male 15.0
Sample C Female 16.7
Sample D Female 17.9
Hippocampal formation
nTPM: 13.2
Samples: 4

Max nTPM: 15.5
Min nTPM: 10.4
Sample A Male 15.5
Sample B Male 14.4
Sample C Female 10.4
Sample D Female 12.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 4.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 4.0
69816888 Antisense, RP_050510_02_B02, Mouse strain C57BL/6J (56 days, male) 4.0

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