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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:78.3 nTPM
HPA:78.3 nTPM
GTEx:68.2 nTPM
FANTOM5:76.7 Scaled Tags Per Million
Pig:65.6 nTPM
Mouse:99.9 nTPM
Allen mouse:13.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 78.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 56.2
1827 Male, age 72, unknown 73.4
2411 Female, age 72, unknown 67.3
2666 Male, age 74, left hemisphere 65.8
1870 Female, age 42, unknown 64.1
1833 Male, age 53, unknown 58.7
2586 Male, age 75, left hemisphere 55.4
2219 Male, age 76, both hemispheres 52.7
2828 Female, age 72, unknown 51.2
1830 Male, age 51, unknown 46.7
2019 Male, age 18, unknown 26.8
Dorsal raphe nucleus
nTPM: 61.9
2298 Female, age 72, unknown 82.9
2047 Male, age 72, unknown 65.9
2750 Male, age 76, both hemispheres 56.2
1828 Male, age 53, unknown 55.7
2016 Female, age 72, unknown 48.7
Inferior colliculus
nTPM: 71.1
2849 Male, age 72, unknown 78.7
2097 Female, age 72, unknown 77.6
1848 Female, age 42, unknown 73.8
1890 Male, age 53, unknown 54.5
Median raphe nucleus
nTPM: 71.3
2220 Male, age 76, midline 71.3
Pedunculopontine tegmental nucleus
nTPM: 60.1
1921 Female, age 85, both hemispheres 73.0
2334 Male, age 80, both hemispheres 72.0
2338 Male, age 61, both hemispheres 35.3
Periaquaductal grey, anterior
nTPM: 78.3
1947 Male, age 18, unknown 90.5
1795 Male, age 51, unknown 73.8
2502 Female, age 75, unknown 70.6
Periaquaductal grey, dorsal
nTPM: 68.1
1840 Male, age 53, unknown 88.1
2850 Male, age 76, both hemispheres 63.4
1831 Male, age 72, unknown 60.5
2464 Female, age 72, unknown 60.2
Periaquaductal grey, lateral
nTPM: 65.9
2053 Male, age 18, unknown 73.7
2140 Male, age 76, both hemispheres 63.8
2272 Male, age 74, both hemispheres 60.1
Pretectal area
nTPM: 63.0
2825 Male, age 18, unknown 85.8
2224 Female, age 72, unknown 85.2
1816 Male, age 51, unknown 71.6
2667 Female, age 75, unknown 65.4
1944 Female, age 72, unknown 60.2
2273 Male, age 74, both hemispheres 59.0
2316 Male, age 76, right hemisphere 58.1
2007 Male, age 72, unknown 53.4
1815 Male, age 53, unknown 52.6
1817 Female, age 42, unknown 51.5
2407 Male, age 75, both hemispheres 50.3
Red nucleus
nTPM: 43.1
1821 Female, age 72, unknown 54.1
2584 Male, age 75, left hemisphere 49.4
2725 Female, age 75, unknown 47.7
2769 Male, age 72, unknown 45.6
1954 Female, age 42, unknown 45.3
2227 Male, age 72, unknown 45.0
2503 Female, age 72, unknown 43.7
2588 Male, age 74, left hemisphere 42.3
1904 Male, age 53, unknown 41.0
2823 Male, age 76, right hemisphere 36.2
1865 Male, age 51, unknown 35.9
2785 Male, age 18, unknown 31.0
Substantia nigra
nTPM: 53.9
1916 Female, age 42, unknown 68.6
2241 Male, age 72, unknown 63.0
1851 Male, age 51, unknown 58.6
1889 Female, age 72, unknown 55.1
2699 Male, age 18, unknown 53.7
2590 Female, age 75, unknown 52.3
2665 Male, age 74, both hemispheres 49.8
1941 Male, age 53, unknown 48.0
2583 Male, age 75, right hemisphere 46.8
2409 Female, age 72, unknown 43.6
Superior colliculus
nTPM: 57.2
1796 Male, age 53, unknown 76.3
2261 Male, age 18, unknown 74.7
1839 Male, age 51, unknown 67.1
1895 Male, age 76, right hemisphere 66.9
2087 Female, age 72, unknown 58.3
2664 Male, age 75, both hemispheres 55.3
2668 Female, age 75, unknown 54.3
2587 Male, age 74, left hemisphere 50.5
1913 Female, age 42, unknown 36.3
1995 Male, age 72, unknown 32.6
Ventral tegmental area
nTPM: 64.4
1915 Female, age 42, unknown 70.8
2218 Male, age 76, both hemispheres 68.1
2021 Male, age 53, unknown 64.0
2410 Female, age 72, unknown 63.4
1942 Male, age 51, unknown 61.3
2223 Female, age 72, unknown 59.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 68.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 68.2
Samples: 139

Max nTPM: 152.8
Min nTPM: 33.0
Std nTPM: 21.5
Median nTPM: 63.6
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 152.8
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 132.5
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 127.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 118.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 116.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 116.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 114.3
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 113.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 107.6
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 107.4
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 106.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 76.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 76.7
FF:10158-103A5 76 years, female 76.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 65.6
Pig sample Sample description nTPM
Midbrain
nTPM: 59.6
Samples: 4

Max nTPM: 80.7
Min nTPM: 38.6
Sample A Female 38.6
Sample B Female 45.7
Sample C Male 80.7
Sample D Male 73.4
Periaqueductal gray
nTPM: 51.0
Samples: 3

Max nTPM: 61.3
Min nTPM: 43.1
Sample B Female 48.6
Sample C Male 61.3
Sample D Male 43.1
Substantia nigra
nTPM: 52.1
Samples: 4

Max nTPM: 70.2
Min nTPM: 31.8
Sample A Female 70.2
Sample B Female 40.2
Sample C Male 66.3
Sample D Male 31.8
Superior colliculi
nTPM: 65.6
Samples: 4

Max nTPM: 74.0
Min nTPM: 50.1
Sample A Female 74.0
Sample B Female 50.1
Sample C Male 71.7
Sample D Male 66.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 99.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 99.9
Samples: 4

Max nTPM: 102.7
Min nTPM: 95.1
Sample A Male 95.1
Sample B Male 102.3
Sample C Female 102.7
Sample D Female 99.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 13.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.0
77620309 Antisense, RP_070205_01_A10, Mouse strain C57BL/6J (56 days, male) 14.3
355883 Antisense, RP_040617_01_F01, Mouse strain C57BL/6J (56 days, male) 11.6
293903 Antisense, RP_040617_01_F01, Mouse strain C57BL/6J (56 days, male) 10.6
77869130 Antisense, RP_070205_01_A10, Mouse strain C57BL/6J (56 days, male) 8.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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