ABOUTMENU
HELP
NEWS
ARMCX3
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:33.7 nTPM
HPA:33.7 nTPM
GTEx:39.3 nTPM
FANTOM5:110.9 Scaled Tags Per Million
Pig:20.0 nTPM
Mouse:72.2 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 33.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 29.9
2019 Male, age 18, unknown 36.3
2411 Female, age 72, unknown 31.8
2586 Male, age 75, left hemisphere 30.1
1827 Male, age 72, unknown 30.0
2666 Male, age 74, left hemisphere 30.0
1870 Female, age 42, unknown 29.7
2828 Female, age 72, unknown 28.6
2219 Male, age 76, both hemispheres 28.2
1833 Male, age 53, unknown 27.3
1830 Male, age 51, unknown 27.2
Dorsal raphe nucleus
nTPM: 30.9
2047 Male, age 72, unknown 34.3
1828 Male, age 53, unknown 32.9
2298 Female, age 72, unknown 31.6
2750 Male, age 76, both hemispheres 29.7
2016 Female, age 72, unknown 25.8
Inferior colliculus
nTPM: 29.4
2097 Female, age 72, unknown 31.3
1890 Male, age 53, unknown 30.5
1848 Female, age 42, unknown 28.7
2849 Male, age 72, unknown 27.3
Median raphe nucleus
nTPM: 30.8
2220 Male, age 76, midline 30.8
Pedunculopontine tegmental nucleus
nTPM: 31.3
2334 Male, age 80, both hemispheres 32.2
2338 Male, age 61, both hemispheres 31.4
1921 Female, age 85, both hemispheres 30.3
Periaquaductal grey, anterior
nTPM: 28.8
2502 Female, age 75, unknown 29.9
1947 Male, age 18, unknown 29.1
1795 Male, age 51, unknown 27.5
Periaquaductal grey, dorsal
nTPM: 27.7
2850 Male, age 76, both hemispheres 28.3
1831 Male, age 72, unknown 28.0
2464 Female, age 72, unknown 27.8
1840 Male, age 53, unknown 26.7
Periaquaductal grey, lateral
nTPM: 25.8
2140 Male, age 76, both hemispheres 26.1
2053 Male, age 18, unknown 25.7
2272 Male, age 74, both hemispheres 25.6
Pretectal area
nTPM: 32.5
1816 Male, age 51, unknown 39.4
2007 Male, age 72, unknown 38.8
1817 Female, age 42, unknown 37.5
1815 Male, age 53, unknown 36.4
1944 Female, age 72, unknown 35.3
2667 Female, age 75, unknown 31.4
2273 Male, age 74, both hemispheres 29.8
2407 Male, age 75, both hemispheres 28.0
2224 Female, age 72, unknown 27.7
2825 Male, age 18, unknown 26.7
2316 Male, age 76, right hemisphere 26.5
Red nucleus
nTPM: 31.9
1821 Female, age 72, unknown 38.2
2588 Male, age 74, left hemisphere 33.1
2785 Male, age 18, unknown 33.0
1954 Female, age 42, unknown 32.5
2503 Female, age 72, unknown 32.0
2584 Male, age 75, left hemisphere 31.9
2725 Female, age 75, unknown 31.7
1865 Male, age 51, unknown 31.5
1904 Male, age 53, unknown 30.4
2823 Male, age 76, right hemisphere 30.4
2227 Male, age 72, unknown 29.7
2769 Male, age 72, unknown 29.1
Substantia nigra
nTPM: 33.7
1889 Female, age 72, unknown 36.0
1916 Female, age 42, unknown 35.6
1941 Male, age 53, unknown 35.1
2241 Male, age 72, unknown 34.8
1851 Male, age 51, unknown 34.6
2665 Male, age 74, both hemispheres 34.5
2583 Male, age 75, right hemisphere 32.2
2409 Female, age 72, unknown 31.9
2590 Female, age 75, unknown 31.8
2699 Male, age 18, unknown 30.2
Superior colliculus
nTPM: 29.7
2087 Female, age 72, unknown 32.5
2587 Male, age 74, left hemisphere 31.5
2261 Male, age 18, unknown 31.2
2668 Female, age 75, unknown 30.9
1895 Male, age 76, right hemisphere 29.8
2664 Male, age 75, both hemispheres 29.3
1796 Male, age 53, unknown 28.8
1913 Female, age 42, unknown 28.2
1839 Male, age 51, unknown 28.1
1995 Male, age 72, unknown 26.7
Ventral tegmental area
nTPM: 30.0
1915 Female, age 42, unknown 33.0
2410 Female, age 72, unknown 30.6
2218 Male, age 76, both hemispheres 29.7
2223 Female, age 72, unknown 29.4
1942 Male, age 51, unknown 29.3
2021 Male, age 53, unknown 28.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 39.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 39.3
Samples: 139

Max nTPM: 63.3
Min nTPM: 23.3
Std nTPM: 7.4
Median nTPM: 38.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 63.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 59.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 58.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 57.1
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 54.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 54.1
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 53.3
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 52.7
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 52.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 52.2
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 50.0
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 110.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 110.9
FF:10158-103A5 76 years, female 110.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 20.0
Pig sample Sample description nTPM
Midbrain
nTPM: 18.0
Samples: 4

Max nTPM: 19.6
Min nTPM: 16.4
Sample A Female 16.6
Sample B Female 19.2
Sample C Male 19.6
Sample D Male 16.4
Periaqueductal gray
nTPM: 17.1
Samples: 3

Max nTPM: 19.3
Min nTPM: 15.1
Sample B Female 16.9
Sample C Male 19.3
Sample D Male 15.1
Substantia nigra
nTPM: 20.0
Samples: 4

Max nTPM: 24.2
Min nTPM: 13.9
Sample A Female 24.2
Sample B Female 18.8
Sample C Male 23.2
Sample D Male 13.9
Superior colliculi
nTPM: 17.9
Samples: 4

Max nTPM: 21.3
Min nTPM: 14.0
Sample A Female 21.3
Sample B Female 14.0
Sample C Male 19.3
Sample D Male 17.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 72.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 72.2
Samples: 4

Max nTPM: 76.5
Min nTPM: 66.0
Sample A Male 66.0
Sample B Male 74.2
Sample C Female 76.5
Sample D Female 71.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
564641 Antisense, RP_040826_01_A09, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.