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CAB39L
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:35.0 nTPM
HPA:35.0 nTPM
GTEx:31.1 nTPM
FANTOM5:103.3 Scaled Tags Per Million
Pig:23.8 nTPM
Mouse:36.3 nTPM
Allen mouse:0.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 35.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 21.5
2586 Male, age 75, left hemisphere 27.0
2828 Female, age 72, unknown 26.7
1827 Male, age 72, unknown 24.1
2219 Male, age 76, both hemispheres 23.1
1870 Female, age 42, unknown 21.3
1833 Male, age 53, unknown 20.5
2666 Male, age 74, left hemisphere 20.4
1830 Male, age 51, unknown 19.5
2411 Female, age 72, unknown 17.1
2019 Male, age 18, unknown 15.4
Dorsal raphe nucleus
nTPM: 21.7
2016 Female, age 72, unknown 28.5
2298 Female, age 72, unknown 24.1
1828 Male, age 53, unknown 21.1
2047 Male, age 72, unknown 18.5
2750 Male, age 76, both hemispheres 16.4
Inferior colliculus
nTPM: 20.4
2849 Male, age 72, unknown 22.0
1848 Female, age 42, unknown 21.9
1890 Male, age 53, unknown 20.0
2097 Female, age 72, unknown 17.8
Median raphe nucleus
nTPM: 16.1
2220 Male, age 76, midline 16.1
Pedunculopontine tegmental nucleus
nTPM: 16.6
1921 Female, age 85, both hemispheres 18.4
2334 Male, age 80, both hemispheres 17.5
2338 Male, age 61, both hemispheres 13.9
Periaquaductal grey, anterior
nTPM: 26.4
2502 Female, age 75, unknown 27.7
1795 Male, age 51, unknown 26.0
1947 Male, age 18, unknown 25.5
Periaquaductal grey, dorsal
nTPM: 26.1
1840 Male, age 53, unknown 29.2
2850 Male, age 76, both hemispheres 28.7
1831 Male, age 72, unknown 25.7
2464 Female, age 72, unknown 20.5
Periaquaductal grey, lateral
nTPM: 29.1
2140 Male, age 76, both hemispheres 29.6
2272 Male, age 74, both hemispheres 29.4
2053 Male, age 18, unknown 28.4
Pretectal area
nTPM: 24.4
2273 Male, age 74, both hemispheres 35.0
2667 Female, age 75, unknown 28.2
2224 Female, age 72, unknown 28.1
2407 Male, age 75, both hemispheres 27.0
1944 Female, age 72, unknown 25.0
2825 Male, age 18, unknown 23.4
1815 Male, age 53, unknown 23.3
1816 Male, age 51, unknown 23.0
2316 Male, age 76, right hemisphere 18.8
2007 Male, age 72, unknown 18.5
1817 Female, age 42, unknown 18.0
Red nucleus
nTPM: 17.4
2725 Female, age 75, unknown 22.1
2503 Female, age 72, unknown 20.1
1821 Female, age 72, unknown 19.0
2588 Male, age 74, left hemisphere 17.5
2584 Male, age 75, left hemisphere 17.3
2769 Male, age 72, unknown 17.3
2227 Male, age 72, unknown 17.1
1865 Male, age 51, unknown 17.0
1954 Female, age 42, unknown 16.5
1904 Male, age 53, unknown 15.9
2823 Male, age 76, right hemisphere 14.7
2785 Male, age 18, unknown 14.1
Substantia nigra
nTPM: 35.0
2699 Male, age 18, unknown 55.9
1916 Female, age 42, unknown 53.2
1851 Male, age 51, unknown 43.9
2241 Male, age 72, unknown 41.8
1941 Male, age 53, unknown 31.5
2590 Female, age 75, unknown 27.4
2409 Female, age 72, unknown 26.9
2583 Male, age 75, right hemisphere 25.6
2665 Male, age 74, both hemispheres 22.6
1889 Female, age 72, unknown 21.2
Superior colliculus
nTPM: 23.8
2664 Male, age 75, both hemispheres 32.7
1796 Male, age 53, unknown 27.2
2261 Male, age 18, unknown 26.2
2587 Male, age 74, left hemisphere 25.0
1839 Male, age 51, unknown 23.0
1995 Male, age 72, unknown 22.6
2087 Female, age 72, unknown 22.6
1913 Female, age 42, unknown 22.2
1895 Male, age 76, right hemisphere 18.7
2668 Female, age 75, unknown 17.6
Ventral tegmental area
nTPM: 27.3
1915 Female, age 42, unknown 34.5
2218 Male, age 76, both hemispheres 29.8
2410 Female, age 72, unknown 29.0
2021 Male, age 53, unknown 25.3
1942 Male, age 51, unknown 24.2
2223 Female, age 72, unknown 20.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 31.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 31.1
Samples: 139

Max nTPM: 61.3
Min nTPM: 10.1
Std nTPM: 10.5
Median nTPM: 30.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 61.3
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 59.2
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 58.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 56.7
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 55.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 55.4
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 54.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 50.6
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 49.9
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 47.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 47.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 103.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 103.3
FF:10158-103A5 76 years, female 103.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 23.8
Pig sample Sample description nTPM
Midbrain
nTPM: 18.3
Samples: 4

Max nTPM: 19.6
Min nTPM: 17.3
Sample A Female 19.6
Sample B Female 17.9
Sample C Male 17.3
Sample D Male 18.5
Periaqueductal gray
nTPM: 18.5
Samples: 3

Max nTPM: 19.7
Min nTPM: 16.6
Sample B Female 16.6
Sample C Male 19.1
Sample D Male 19.7
Substantia nigra
nTPM: 16.5
Samples: 4

Max nTPM: 19.0
Min nTPM: 14.9
Sample A Female 19.0
Sample B Female 15.5
Sample C Male 16.5
Sample D Male 14.9
Superior colliculi
nTPM: 23.8
Samples: 4

Max nTPM: 42.3
Min nTPM: 15.4
Sample A Female 19.1
Sample B Female 42.3
Sample C Male 15.4
Sample D Male 18.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 36.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 36.4
Samples: 4

Max nTPM: 40.3
Min nTPM: 33.8
Sample A Male 33.8
Sample B Male 35.1
Sample C Female 36.2
Sample D Female 40.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
68341693 Antisense, RP_041207_02_A06, Mouse strain C57BL/6J (56 days, male) 1.7
77910729 Antisense, RP_070208_04_F09, Mouse strain C57BL/6J (56 days, male) 0.5
77371789 Antisense, RP_070116_01_C04, Mouse strain C57BL/6J (56 days, male) 0.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.