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SLC38A7
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni
Consensus:7.9 nTPM
HPA:7.9 nTPM
GTEx:6.6 nTPM
FANTOM5:4.7 Scaled Tags Per Million
Pig:7.8 nTPM
Mouse:14.1 nTPM
Allen mouse:1.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA041777Antibody HPA049428
Glial cells LowHigh
Neuronal cells HighHigh




HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 7.9
Sample id Sample description nTPM
Hippocampus
nTPM: 7.2
1855 Male, age 76, left hemisphere 8.4
2621 Female, age 67, right hemisphere 8.0
1911 Female, age 85, right hemisphere 7.2
2148 Female, age 91, left hemisphere 7.0
1898 Male, age 80, left hemisphere 6.8
2529 Female, age 94, left hemisphere 6.0
Dentate gyrus
nTPM: 7.0
1927 Female, age 91, both hemispheres 7.7
2246 Female, age 85, both hemispheres 7.2
2531 Female, age 67, both hemispheres 7.1
2010 Male, age 76, both hemispheres 7.0
2528 Male, age 74, both hemispheres 6.4
2530 Female, age 94, left hemisphere 6.4
Entorhinal gyrus
nTPM: 7.4
1787 Male, age 76, left hemisphere 8.4
2613 Female, age 94, left hemisphere 7.9
2764 Male, age 80, right hemisphere 7.3
2686 Male, age 75, right hemisphere 7.1
2117 Female, age 91, right hemisphere 6.8
1938 Female, age 85, left hemisphere 6.7
Hippocampus, CA1
nTPM: 7.2
2749 Male, age 80, left hemisphere 7.9
2045 Male, age 76, both hemispheres 7.4
2082 Female, age 91, right hemisphere 7.1
1873 Female, age 85, both hemispheres 7.0
2527 Male, age 74, both hemispheres 6.5
Hippocampus, CA2
nTPM: 7.2
1892 Male, age 76, both hemispheres 9.0
1940 Female, age 85, left hemisphere 7.3
2113 Female, age 91, right hemisphere 7.0
1963 Male, age 80, left hemisphere 6.7
2249 Male, age 74, both hemispheres 6.5
2437 Female, age 94, left hemisphere 6.5
Hippocampus, CA3
nTPM: 7.2
1867 Male, age 76, both hemispheres 7.9
2620 Female, age 94, left hemisphere 7.6
2861 Female, age 67, both hemispheres 7.6
2137 Male, age 80, left hemisphere 7.3
2436 Male, age 74, both hemispheres 6.8
1891 Female, age 85, both hemispheres 6.3
Parahippocampal cortex
nTPM: 7.5
2622 Female, age 67, right hemisphere 8.5
2693 Female, age 94, both hemispheres 8.3
2250 Female, age 67, right hemisphere 7.9
2692 Male, age 74, both hemispheres 7.5
2245 Female, age 91, both hemispheres 7.4
2532 Female, age 72, left hemisphere 7.3
1933 Female, age 85, both hemispheres 7.2
2018 Male, age 76, both hemispheres 7.2
1850 Male, age 80, both hemispheres 6.8
1990 Female, age 91, right hemisphere 6.7
Perirhinal gyrus
nTPM: 7.9
2521 Female, age 94, right hemisphere 8.6
1794 Male, age 80, right hemisphere 8.5
2848 Male, age 76, right hemisphere 7.7
1847 Female, age 91, left hemisphere 7.5
1841 Female, age 85, right hemisphere 7.1
Subiculum
nTPM: 6.6
2619 Male, age 74, both hemispheres 7.8
1977 Female, age 85, both hemispheres 6.8
2042 Male, age 76, both hemispheres 6.7
2729 Female, age 91, right hemisphere 6.6
1901 Male, age 80, both hemispheres 6.2
2438 Female, age 94, left hemisphere 5.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 6.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 6.6
Samples: 197

Max nTPM: 12.0
Min nTPM: 2.9
Std nTPM: 1.7
Median nTPM: 6.6
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 12.0
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 12.0
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 11.2
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 11.2
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 10.7
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 10.3
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 10.0
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 9.9
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 9.9
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 9.8
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 9.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 4.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 4.7
FF:10153-102I9 76 years, female 7.3
FF:10169-103B7 60 years, female 2.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 7.8
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 7.5
Samples: 4

Max nTPM: 9.4
Min nTPM: 6.3
Sample A Female 9.4
Sample B Female 7.8
Sample C Male 6.3
Sample D Male 6.4
Entorhinal cortex
nTPM: 7.8
Samples: 4

Max nTPM: 8.9
Min nTPM: 7.0
Sample A Female 8.9
Sample B Female 7.0
Sample C Male 7.6
Sample D Male 7.6
Subiculum
nTPM: 7.6
Samples: 4

Max nTPM: 9.4
Min nTPM: 6.7
Sample A Female 9.4
Sample B Female 6.7
Sample C Male 7.3
Sample D Male 7.0
Ventral hippocampus
nTPM: 7.6
Samples: 4

Max nTPM: 8.7
Min nTPM: 5.1
Sample A Female 8.6
Sample B Female 5.1
Sample C Male 8.7
Sample D Male 7.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 14.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 13.4
Samples: 4

Max nTPM: 14.8
Min nTPM: 12.0
Sample A Male 12.0
Sample B Male 13.0
Sample C Female 13.7
Sample D Female 14.8
Hippocampal formation
nTPM: 14.1
Samples: 4

Max nTPM: 15.4
Min nTPM: 11.8
Sample A Male 11.8
Sample B Male 15.4
Sample C Female 15.1
Sample D Female 14.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.7
68637969 Antisense, RP_050126_02_A03, Mouse strain C57BL/6J (56 days, male) 1.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.