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LMF1
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.9 nTPM
HPA:13.9 nTPM
GTEx:11.0 nTPM
FANTOM5:402.2 Scaled Tags Per Million
Pig:20.9 nTPM
Mouse:18.1 nTPM
Allen mouse:0.3 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 13.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 12.2
2289 Male, age 61, right hemisphere 17.3
2290 Female, age 72, unknown 16.7
1854 Male, age 80, left hemisphere 13.1
2288 Male, age 75, left hemisphere 12.6
1781 Male, age 74, unknown 12.0
2481 Female, age 94, left hemisphere 9.8
2846 Female, age 79, unknown 9.0
1857 Female, age 85, left hemisphere 7.2
Claustrum
nTPM: 10.2
2568 Male, age 61, both hemispheres 12.7
2292 Female, age 85, both hemispheres 12.1
2491 Male, age 75, both hemispheres 10.7
2645 Female, age 72, unknown 10.6
2284 Female, age 91, both hemispheres 10.1
2196 Female, age 79, unknown 9.5
2198 Male, age 80, both hemispheres 9.2
1956 Male, age 74, unknown 9.0
2392 Female, age 94, both hemispheres 7.9
Globus pallidus, externus
nTPM: 11.8
2567 Female, age 72, unknown 16.1
2646 Male, age 61, right hemisphere 15.8
1996 Male, age 80, right hemisphere 10.5
2772 Female, age 79, unknown 8.4
2395 Male, age 75, both hemispheres 8.2
Globus pallidus, internus
nTPM: 12.0
2111 Female, age 85, right hemisphere 16.4
2778 Female, age 91, both hemispheres 13.9
2566 Female, age 72, unknown 13.1
2483 Female, age 94, right hemisphere 12.1
1818 Male, age 74, unknown 10.6
2037 Male, age 80, right hemisphere 9.4
2287 Male, age 75, right hemisphere 8.3
Nucleus accumbens
nTPM: 12.5
2824 Male, age 61, right hemisphere 18.3
1783 Male, age 74, unknown 15.9
2732 Male, age 80, right hemisphere 13.8
1806 Female, age 85, left hemisphere 13.0
2286 Male, age 75, left hemisphere 12.3
1856 Female, age 91, right hemisphere 9.8
2391 Female, age 94, left hemisphere 9.7
2698 Female, age 72, unknown 7.2
Nucleus basalis of Meynert
nTPM: 13.7
2484 Female, age 94, left hemisphere 18.2
2569 Male, age 61, both hemispheres 15.1
2393 Male, age 80, right hemisphere 12.2
2821 Male, age 75, both hemispheres 9.2
Nucleus of the diagonal band
nTPM: 6.9
2029 Male, age 61, right hemisphere 9.4
2195 Female, age 85, both hemispheres 7.0
1979 Male, age 74, unknown 6.5
1812 Female, age 91, both hemispheres 5.8
2775 Male, age 80, right hemisphere 5.6
Olfactory tubercle
nTPM: 6.8
1998 Female, age 91, both hemispheres 9.4
2487 Female, age 94, left hemisphere 7.4
2856 Male, age 75, right hemisphere 6.5
1846 Male, age 80, right hemisphere 4.2
Putamen
nTPM: 13.9
2489 Female, age 72, unknown 18.8
2466 Female, age 79, unknown 18.0
2647 Male, age 75, left hemisphere 13.3
1838 Male, age 80, right hemisphere 13.1
1937 Female, age 91, right hemisphere 12.6
1829 Male, age 74, unknown 11.2
2482 Female, age 94, left hemisphere 10.0
Septal nuclei
nTPM: 7.2
2059 Female, age 85, both hemispheres 11.1
2394 Male, age 61, left hemisphere 10.0
1960 Male, age 74, unknown 7.3
2031 Female, age 72, unknown 6.8
2199 Male, age 80, right hemisphere 5.7
2009 Female, age 91, both hemispheres 5.4
2629 Female, age 94, right hemisphere 4.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 11.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 9.8
Samples: 246

Max nTPM: 17.2
Min nTPM: 3.8
Std nTPM: 2.5
Median nTPM: 9.4
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 17.2
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 16.8
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 16.5
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 16.4
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 16.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 15.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 15.4
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 15.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 15.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 15.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 14.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 10.9
Samples: 246

Max nTPM: 22.5
Min nTPM: 3.8
Std nTPM: 3.2
Median nTPM: 10.6
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 22.5
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 21.7
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 20.9
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 19.3
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 18.6
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 18.2
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 18.2
GTEX-15RJE-0011-R6a-SM-7DHL8 40-49 years, male 18.1
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 17.2
GTEX-1JJEA-0011-R6a-SM-EXUS1 60-69 years, male 17.1
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 16.8
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Brain - Putamen (basal ganglia)
Average nTPM: 11.0
Samples: 205

Max nTPM: 20.5
Min nTPM: 5.1
Std nTPM: 2.7
Median nTPM: 10.8
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 20.5
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 19.9
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 18.4
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 17.8
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 17.5
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 16.8
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 16.7
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 16.7
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 16.4
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 16.3
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 16.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 402.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 402.2
FF:10164-103B2 76 years, female 402.2
Globus pallidus
Scaled Tags Per Million: 253.3
FF:10175-103C4 60 years, female 277.8
FF:10161-103A8 76 years, female 228.9
Nucleus accumbens
Scaled Tags Per Million: 176.8
FF:10037-101F1 23-56 years, mixed 176.8
Putamen
Scaled Tags Per Million: 322.3
FF:10176-103C5 60 years, female 322.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 20.9
Pig sample Sample description nTPM
Caudate
nTPM: 17.4
Samples: 4

Max nTPM: 19.3
Min nTPM: 14.7
Sample A Female 14.7
Sample B Female 19.3
Sample C Male 18.8
Sample D Male 16.9
Putamen
nTPM: 20.9
Samples: 4

Max nTPM: 24.5
Min nTPM: 17.2
Sample A Female 24.1
Sample B Female 17.2
Sample C Male 17.9
Sample D Male 24.5
Septum
nTPM: 15.0
Samples: 4

Max nTPM: 17.6
Min nTPM: 13.0
Sample A Female 17.6
Sample B Female 15.5
Sample C Male 13.0
Sample D Male 14.0
Ventral pallidum
nTPM: 19.0
Samples: 4

Max nTPM: 23.1
Min nTPM: 14.3
Sample A Female 14.3
Sample B Female 17.9
Sample C Male 20.7
Sample D Male 23.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 18.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 18.1
Samples: 4

Max nTPM: 18.4
Min nTPM: 17.7
Sample A Male 18.1
Sample B Male 17.7
Sample C Female 18.1
Sample D Female 18.4
Septum
nTPM: 14.3
Samples: 4

Max nTPM: 15.5
Min nTPM: 12.5
Sample A Male 12.5
Sample B Male 14.2
Sample C Female 14.9
Sample D Female 15.5
Ventral forebrain
nTPM: 15.4
Samples: 4

Max nTPM: 17.5
Min nTPM: 13.5
Sample A Male 13.5
Sample B Male 14.4
Sample C Female 17.5
Sample D Female 16.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.3
583876 Antisense, RP_040831_01_D04, Mouse strain C57BL/6J (56 days, male) 0.3
Pallidum
Expression energy: 0.2
583876 Antisense, RP_040831_01_D04, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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