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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:239.0 nTPM
HPA:239.0 nTPM
GTEx:331.5 nTPM
FANTOM5:82.9 Scaled Tags Per Million
Mouse:63.5 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 239.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 224.8
2586 Male, age 75, left hemisphere 328.3
2828 Female, age 72, unknown 265.7
2219 Male, age 76, both hemispheres 229.6
2019 Male, age 18, unknown 214.4
2411 Female, age 72, unknown 210.0
1870 Female, age 42, unknown 205.2
1833 Male, age 53, unknown 202.4
1827 Male, age 72, unknown 201.0
1830 Male, age 51, unknown 197.6
2666 Male, age 74, left hemisphere 194.1
Dorsal raphe nucleus
nTPM: 224.0
2016 Female, age 72, unknown 268.6
1828 Male, age 53, unknown 216.2
2298 Female, age 72, unknown 212.1
2750 Male, age 76, both hemispheres 211.7
2047 Male, age 72, unknown 211.2
Inferior colliculus
nTPM: 194.7
1890 Male, age 53, unknown 208.5
1848 Female, age 42, unknown 197.3
2097 Female, age 72, unknown 188.1
2849 Male, age 72, unknown 184.9
Median raphe nucleus
nTPM: 181.2
2220 Male, age 76, midline 181.2
Pedunculopontine tegmental nucleus
nTPM: 175.4
1921 Female, age 85, both hemispheres 183.8
2334 Male, age 80, both hemispheres 174.1
2338 Male, age 61, both hemispheres 168.3
Periaquaductal grey, anterior
nTPM: 239.0
1795 Male, age 51, unknown 263.3
2502 Female, age 75, unknown 254.9
1947 Male, age 18, unknown 198.7
Periaquaductal grey, dorsal
nTPM: 217.6
1840 Male, age 53, unknown 228.2
2464 Female, age 72, unknown 214.7
1831 Male, age 72, unknown 214.3
2850 Male, age 76, both hemispheres 213.0
Periaquaductal grey, lateral
nTPM: 232.3
2140 Male, age 76, both hemispheres 239.5
2272 Male, age 74, both hemispheres 235.0
2053 Male, age 18, unknown 222.4
Pretectal area
nTPM: 212.4
2273 Male, age 74, both hemispheres 240.8
2316 Male, age 76, right hemisphere 231.8
1815 Male, age 53, unknown 221.7
1817 Female, age 42, unknown 214.2
2007 Male, age 72, unknown 212.9
2825 Male, age 18, unknown 209.1
1816 Male, age 51, unknown 206.3
2407 Male, age 75, both hemispheres 206.2
1944 Female, age 72, unknown 203.4
2224 Female, age 72, unknown 199.7
2667 Female, age 75, unknown 190.1
Red nucleus
nTPM: 227.8
2503 Female, age 72, unknown 265.3
2227 Male, age 72, unknown 263.6
2769 Male, age 72, unknown 259.8
2588 Male, age 74, left hemisphere 242.1
1904 Male, age 53, unknown 241.2
2785 Male, age 18, unknown 237.0
1954 Female, age 42, unknown 221.9
2584 Male, age 75, left hemisphere 211.9
1865 Male, age 51, unknown 204.8
2725 Female, age 75, unknown 200.7
1821 Female, age 72, unknown 195.5
2823 Male, age 76, right hemisphere 190.1
Substantia nigra
nTPM: 216.7
2699 Male, age 18, unknown 252.6
2590 Female, age 75, unknown 239.5
2583 Male, age 75, right hemisphere 237.0
1851 Male, age 51, unknown 235.6
2665 Male, age 74, both hemispheres 231.5
1916 Female, age 42, unknown 224.1
1889 Female, age 72, unknown 196.6
2409 Female, age 72, unknown 185.4
1941 Male, age 53, unknown 184.0
2241 Male, age 72, unknown 180.6
Superior colliculus
nTPM: 228.3
2664 Male, age 75, both hemispheres 298.0
1995 Male, age 72, unknown 254.8
2668 Female, age 75, unknown 236.6
2261 Male, age 18, unknown 234.1
1796 Male, age 53, unknown 231.6
1913 Female, age 42, unknown 222.6
2587 Male, age 74, left hemisphere 218.9
1839 Male, age 51, unknown 213.1
2087 Female, age 72, unknown 203.2
1895 Male, age 76, right hemisphere 170.1
Ventral tegmental area
nTPM: 223.4
1942 Male, age 51, unknown 244.4
1915 Female, age 42, unknown 232.3
2021 Male, age 53, unknown 224.7
2410 Female, age 72, unknown 224.1
2223 Female, age 72, unknown 211.3
2218 Male, age 76, both hemispheres 203.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 331.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 331.5
Samples: 139

Max nTPM: 792.2
Min nTPM: 66.9
Std nTPM: 147.8
Median nTPM: 318.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 792.2
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 684.4
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 664.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 641.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 635.0
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 630.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 629.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 606.5
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 591.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 590.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 589.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 82.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 82.9
FF:10158-103A5 76 years, female 82.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 63.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 63.5
Samples: 4

Max nTPM: 82.9
Min nTPM: 48.5
Sample A Male 82.9
Sample B Male 56.1
Sample C Female 48.5
Sample D Female 66.5

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The Human Protein Atlas

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