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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:187.3 nTPM
HPA:187.3 nTPM
GTEx:152.8 nTPM
FANTOM5:152.8 Scaled Tags Per Million
Pig:72.4 nTPM
Mouse:130.1 nTPM
Allen mouse:7.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA041222Antibody HPA043531Antibody CAB037202Antibody CAB037209
Glial cells Not detectedNot detectedMediumMedium
Neuronal cells MediumLowHighHigh







HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 187.3
Sample id Sample description nTPM
Hippocampus
nTPM: 180.8
1898 Male, age 80, left hemisphere 190.8
2529 Female, age 94, left hemisphere 182.6
2148 Female, age 91, left hemisphere 181.9
2621 Female, age 67, right hemisphere 180.5
1855 Male, age 76, left hemisphere 176.2
1911 Female, age 85, right hemisphere 172.8
Dentate gyrus
nTPM: 178.7
2530 Female, age 94, left hemisphere 190.4
1927 Female, age 91, both hemispheres 179.6
2010 Male, age 76, both hemispheres 177.8
2531 Female, age 67, both hemispheres 176.9
2528 Male, age 74, both hemispheres 174.1
2246 Female, age 85, both hemispheres 173.3
Entorhinal gyrus
nTPM: 184.3
2764 Male, age 80, right hemisphere 194.5
2613 Female, age 94, left hemisphere 185.6
1938 Female, age 85, left hemisphere 182.6
1787 Male, age 76, left hemisphere 182.1
2686 Male, age 75, right hemisphere 181.7
2117 Female, age 91, right hemisphere 179.0
Hippocampus, CA1
nTPM: 181.0
2749 Male, age 80, left hemisphere 203.1
1873 Female, age 85, both hemispheres 178.4
2527 Male, age 74, both hemispheres 177.5
2045 Male, age 76, both hemispheres 173.2
2082 Female, age 91, right hemisphere 172.8
Hippocampus, CA2
nTPM: 181.0
1963 Male, age 80, left hemisphere 190.6
1892 Male, age 76, both hemispheres 186.8
2437 Female, age 94, left hemisphere 185.6
1940 Female, age 85, left hemisphere 175.6
2113 Female, age 91, right hemisphere 175.0
2249 Male, age 74, both hemispheres 172.5
Hippocampus, CA3
nTPM: 179.8
2137 Male, age 80, left hemisphere 188.0
2861 Female, age 67, both hemispheres 186.9
1867 Male, age 76, both hemispheres 178.7
2620 Female, age 94, left hemisphere 176.7
2436 Male, age 74, both hemispheres 174.5
1891 Female, age 85, both hemispheres 174.4
Parahippocampal cortex
nTPM: 180.5
1850 Male, age 80, both hemispheres 190.2
2622 Female, age 67, right hemisphere 182.7
2245 Female, age 91, both hemispheres 182.3
2532 Female, age 72, left hemisphere 181.8
1990 Female, age 91, right hemisphere 181.4
1933 Female, age 85, both hemispheres 180.2
2250 Female, age 67, right hemisphere 179.9
2692 Male, age 74, both hemispheres 177.9
2018 Male, age 76, both hemispheres 175.2
2693 Female, age 94, both hemispheres 173.2
Perirhinal gyrus
nTPM: 187.3
1794 Male, age 80, right hemisphere 196.1
1847 Female, age 91, left hemisphere 191.0
1841 Female, age 85, right hemisphere 186.4
2848 Male, age 76, right hemisphere 182.2
2521 Female, age 94, right hemisphere 180.8
Subiculum
nTPM: 177.8
1901 Male, age 80, both hemispheres 182.0
2438 Female, age 94, left hemisphere 181.6
1977 Female, age 85, both hemispheres 181.0
2619 Male, age 74, both hemispheres 181.0
2729 Female, age 91, right hemisphere 170.9
2042 Male, age 76, both hemispheres 170.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 152.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 152.8
Samples: 197

Max nTPM: 360.7
Min nTPM: 66.7
Std nTPM: 45.4
Median nTPM: 146.3
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 360.7
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 325.4
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 312.9
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 299.9
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 279.4
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 248.8
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 246.5
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 244.6
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 238.9
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 234.9
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 234.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 152.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 152.8
FF:10169-103B7 60 years, female 163.2
FF:10153-102I9 76 years, female 142.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 72.4
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 72.4
Samples: 4

Max nTPM: 95.9
Min nTPM: 52.9
Sample A Female 95.9
Sample B Female 68.6
Sample C Male 72.1
Sample D Male 52.9
Entorhinal cortex
nTPM: 68.8
Samples: 4

Max nTPM: 74.5
Min nTPM: 59.1
Sample A Female 68.8
Sample B Female 74.5
Sample C Male 72.6
Sample D Male 59.1
Subiculum
nTPM: 66.9
Samples: 4

Max nTPM: 88.8
Min nTPM: 58.6
Sample A Female 88.8
Sample B Female 58.6
Sample C Male 60.3
Sample D Male 59.9
Ventral hippocampus
nTPM: 69.5
Samples: 4

Max nTPM: 86.6
Min nTPM: 46.4
Sample A Female 69.5
Sample B Female 46.4
Sample C Male 86.6
Sample D Male 75.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 130.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 128.0
Samples: 4

Max nTPM: 135.7
Min nTPM: 121.6
Sample A Male 121.6
Sample B Male 124.2
Sample C Female 130.3
Sample D Female 135.7
Hippocampal formation
nTPM: 130.1
Samples: 4

Max nTPM: 138.5
Min nTPM: 120.3
Sample A Male 138.5
Sample B Male 120.3
Sample C Female 134.5
Sample D Female 127.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 7.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 7.0
71608348 Antisense, RP_050927_01_E04, Mouse strain C57BL/6J (56 days, male) 10.4
77620401 Antisense, RP_070205_01_F10, Mouse strain C57BL/6J (56 days, male) 6.3
79912552 Antisense, RP_080109_01_B07, Mouse strain C57BL/6J (56 days, male) 4.3

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.