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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:144.6 nTPM
HPA:144.6 nTPM
GTEx:80.1 nTPM
FANTOM5:89.9 Scaled Tags Per Million
Pig:57.7 nTPM
Mouse:56.3 nTPM
Allen mouse:2.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 144.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 141.7
2586 Male, age 75, left hemisphere 166.3
2828 Female, age 72, unknown 152.5
2666 Male, age 74, left hemisphere 147.6
2219 Male, age 76, both hemispheres 143.4
1827 Male, age 72, unknown 143.0
1870 Female, age 42, unknown 134.7
1833 Male, age 53, unknown 133.3
2019 Male, age 18, unknown 132.9
2411 Female, age 72, unknown 131.6
1830 Male, age 51, unknown 131.5
Dorsal raphe nucleus
nTPM: 133.9
2047 Male, age 72, unknown 137.4
1828 Male, age 53, unknown 134.2
2298 Female, age 72, unknown 133.6
2016 Female, age 72, unknown 132.4
2750 Male, age 76, both hemispheres 131.5
Inferior colliculus
nTPM: 133.8
1890 Male, age 53, unknown 137.6
2097 Female, age 72, unknown 133.9
1848 Female, age 42, unknown 133.0
2849 Male, age 72, unknown 130.9
Median raphe nucleus
nTPM: 137.8
2220 Male, age 76, midline 137.8
Pedunculopontine tegmental nucleus
nTPM: 131.2
1921 Female, age 85, both hemispheres 132.4
2334 Male, age 80, both hemispheres 131.1
2338 Male, age 61, both hemispheres 130.2
Periaquaductal grey, anterior
nTPM: 144.6
1795 Male, age 51, unknown 146.0
2502 Female, age 75, unknown 144.0
1947 Male, age 18, unknown 143.7
Periaquaductal grey, dorsal
nTPM: 131.4
1831 Male, age 72, unknown 135.3
2850 Male, age 76, both hemispheres 132.6
1840 Male, age 53, unknown 129.1
2464 Female, age 72, unknown 128.8
Periaquaductal grey, lateral
nTPM: 133.2
2053 Male, age 18, unknown 135.1
2272 Male, age 74, both hemispheres 134.2
2140 Male, age 76, both hemispheres 130.5
Pretectal area
nTPM: 137.5
1816 Male, age 51, unknown 147.2
1815 Male, age 53, unknown 142.8
2007 Male, age 72, unknown 142.5
1817 Female, age 42, unknown 141.6
2407 Male, age 75, both hemispheres 139.9
1944 Female, age 72, unknown 138.2
2825 Male, age 18, unknown 136.9
2667 Female, age 75, unknown 135.2
2273 Male, age 74, both hemispheres 130.4
2316 Male, age 76, right hemisphere 129.9
2224 Female, age 72, unknown 127.7
Red nucleus
nTPM: 138.9
2584 Male, age 75, left hemisphere 155.6
2588 Male, age 74, left hemisphere 142.7
2725 Female, age 75, unknown 138.9
2785 Male, age 18, unknown 138.9
1904 Male, age 53, unknown 138.8
2503 Female, age 72, unknown 138.5
2227 Male, age 72, unknown 137.2
1865 Male, age 51, unknown 137.0
2769 Male, age 72, unknown 136.8
1954 Female, age 42, unknown 135.6
2823 Male, age 76, right hemisphere 133.8
1821 Female, age 72, unknown 132.6
Substantia nigra
nTPM: 141.6
2665 Male, age 74, both hemispheres 152.0
1916 Female, age 42, unknown 146.9
2583 Male, age 75, right hemisphere 146.0
1851 Male, age 51, unknown 145.4
2699 Male, age 18, unknown 142.6
2590 Female, age 75, unknown 141.0
1941 Male, age 53, unknown 139.6
1889 Female, age 72, unknown 138.3
2241 Male, age 72, unknown 134.4
2409 Female, age 72, unknown 129.5
Superior colliculus
nTPM: 140.2
2664 Male, age 75, both hemispheres 156.8
1796 Male, age 53, unknown 145.5
2261 Male, age 18, unknown 145.4
2668 Female, age 75, unknown 142.1
2087 Female, age 72, unknown 140.2
1913 Female, age 42, unknown 138.7
1995 Male, age 72, unknown 137.4
1839 Male, age 51, unknown 133.7
2587 Male, age 74, left hemisphere 133.2
1895 Male, age 76, right hemisphere 129.5
Ventral tegmental area
nTPM: 139.3
1942 Male, age 51, unknown 142.3
1915 Female, age 42, unknown 142.0
2410 Female, age 72, unknown 140.7
2218 Male, age 76, both hemispheres 139.8
2021 Male, age 53, unknown 135.5
2223 Female, age 72, unknown 135.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 80.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 80.1
Samples: 139

Max nTPM: 122.1
Min nTPM: 44.5
Std nTPM: 15.8
Median nTPM: 79.1
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 122.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 118.7
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 113.6
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 113.1
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 110.9
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 109.2
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 109.1
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 108.3
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 106.4
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 106.1
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 104.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 89.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 89.9
FF:10158-103A5 76 years, female 89.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 57.7
Pig sample Sample description nTPM
Midbrain
nTPM: 57.7
Samples: 4

Max nTPM: 63.9
Min nTPM: 46.4
Sample A Female 61.2
Sample B Female 46.4
Sample C Male 63.9
Sample D Male 59.3
Periaqueductal gray
nTPM: 43.7
Samples: 3

Max nTPM: 48.5
Min nTPM: 40.8
Sample B Female 40.8
Sample C Male 48.5
Sample D Male 41.8
Substantia nigra
nTPM: 52.3
Samples: 4

Max nTPM: 56.1
Min nTPM: 44.4
Sample A Female 56.1
Sample B Female 44.4
Sample C Male 56.1
Sample D Male 52.7
Superior colliculi
nTPM: 57.4
Samples: 4

Max nTPM: 63.3
Min nTPM: 52.3
Sample A Female 59.6
Sample B Female 52.3
Sample C Male 54.5
Sample D Male 63.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 56.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 56.4
Samples: 4

Max nTPM: 60.7
Min nTPM: 54.0
Sample A Male 60.7
Sample B Male 54.0
Sample C Female 54.9
Sample D Female 55.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.6
71488768 Antisense, RP_050825_02_D12, Mouse strain C57BL/6J (56 days, male) 2.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.