ABOUTMENU
HELP
NEWS
TJP1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:28.6 nTPM
HPA:28.6 nTPM
GTEx:41.5 nTPM
FANTOM5:143.2 Scaled Tags Per Million
Pig:66.8 nTPM
Mouse:36.9 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 28.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.1
1833 Male, age 53, unknown 27.2
1830 Male, age 51, unknown 27.1
2411 Female, age 72, unknown 24.1
1870 Female, age 42, unknown 23.9
2019 Male, age 18, unknown 21.8
2586 Male, age 75, left hemisphere 21.4
2828 Female, age 72, unknown 21.2
2666 Male, age 74, left hemisphere 19.8
2219 Male, age 76, both hemispheres 18.3
1827 Male, age 72, unknown 16.0
Dorsal raphe nucleus
nTPM: 16.2
2750 Male, age 76, both hemispheres 22.6
2016 Female, age 72, unknown 19.9
1828 Male, age 53, unknown 16.4
2047 Male, age 72, unknown 12.6
2298 Female, age 72, unknown 9.4
Inferior colliculus
nTPM: 17.3
2849 Male, age 72, unknown 18.9
1890 Male, age 53, unknown 18.5
1848 Female, age 42, unknown 17.6
2097 Female, age 72, unknown 14.3
Median raphe nucleus
nTPM: 15.3
2220 Male, age 76, midline 15.3
Pedunculopontine tegmental nucleus
nTPM: 18.4
2338 Male, age 61, both hemispheres 20.5
2334 Male, age 80, both hemispheres 20.1
1921 Female, age 85, both hemispheres 14.7
Periaquaductal grey, anterior
nTPM: 13.4
1947 Male, age 18, unknown 14.8
2502 Female, age 75, unknown 13.6
1795 Male, age 51, unknown 11.9
Periaquaductal grey, dorsal
nTPM: 15.6
2464 Female, age 72, unknown 17.5
2850 Male, age 76, both hemispheres 17.4
1831 Male, age 72, unknown 16.2
1840 Male, age 53, unknown 11.3
Periaquaductal grey, lateral
nTPM: 15.6
2140 Male, age 76, both hemispheres 18.9
2053 Male, age 18, unknown 15.2
2272 Male, age 74, both hemispheres 12.5
Pretectal area
nTPM: 16.1
1815 Male, age 53, unknown 21.9
2316 Male, age 76, right hemisphere 21.5
2667 Female, age 75, unknown 19.3
2825 Male, age 18, unknown 17.8
1817 Female, age 42, unknown 17.4
2407 Male, age 75, both hemispheres 17.3
2224 Female, age 72, unknown 13.7
2007 Male, age 72, unknown 13.1
2273 Male, age 74, both hemispheres 12.3
1944 Female, age 72, unknown 12.2
1816 Male, age 51, unknown 10.2
Red nucleus
nTPM: 28.6
1904 Male, age 53, unknown 36.4
1865 Male, age 51, unknown 36.0
2823 Male, age 76, right hemisphere 30.9
2769 Male, age 72, unknown 30.8
2227 Male, age 72, unknown 30.5
2503 Female, age 72, unknown 30.4
1954 Female, age 42, unknown 29.6
1821 Female, age 72, unknown 27.7
2588 Male, age 74, left hemisphere 27.3
2785 Male, age 18, unknown 26.4
2725 Female, age 75, unknown 20.9
2584 Male, age 75, left hemisphere 16.5
Substantia nigra
nTPM: 19.6
2699 Male, age 18, unknown 27.4
2409 Female, age 72, unknown 25.7
2665 Male, age 74, both hemispheres 21.1
1851 Male, age 51, unknown 20.9
2583 Male, age 75, right hemisphere 19.3
2590 Female, age 75, unknown 19.1
2241 Male, age 72, unknown 17.8
1889 Female, age 72, unknown 17.5
1916 Female, age 42, unknown 14.6
1941 Male, age 53, unknown 12.4
Superior colliculus
nTPM: 19.8
1913 Female, age 42, unknown 30.0
1995 Male, age 72, unknown 28.7
1895 Male, age 76, right hemisphere 23.9
2668 Female, age 75, unknown 21.9
2587 Male, age 74, left hemisphere 19.8
1839 Male, age 51, unknown 18.8
2087 Female, age 72, unknown 14.8
2664 Male, age 75, both hemispheres 14.4
1796 Male, age 53, unknown 14.2
2261 Male, age 18, unknown 11.2
Ventral tegmental area
nTPM: 18.6
2223 Female, age 72, unknown 22.2
2410 Female, age 72, unknown 20.8
2021 Male, age 53, unknown 18.3
1915 Female, age 42, unknown 17.3
2218 Male, age 76, both hemispheres 16.8
1942 Male, age 51, unknown 16.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 41.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 41.5
Samples: 139

Max nTPM: 86.6
Min nTPM: 15.5
Std nTPM: 13.5
Median nTPM: 41.5
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 86.6
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 79.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 71.7
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 66.7
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 66.6
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 65.9
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 65.1
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 64.8
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 64.7
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 64.5
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 62.8
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 143.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 143.2
FF:10158-103A5 76 years, female 143.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 66.8
Pig sample Sample description nTPM
Midbrain
nTPM: 60.5
Samples: 4

Max nTPM: 89.0
Min nTPM: 46.5
Sample A Female 89.0
Sample B Female 57.5
Sample C Male 48.8
Sample D Male 46.5
Periaqueductal gray
nTPM: 50.4
Samples: 3

Max nTPM: 54.7
Min nTPM: 48.0
Sample B Female 54.7
Sample C Male 48.0
Sample D Male 48.6
Substantia nigra
nTPM: 62.4
Samples: 4

Max nTPM: 77.4
Min nTPM: 53.3
Sample A Female 54.4
Sample B Female 64.3
Sample C Male 53.3
Sample D Male 77.4
Superior colliculi
nTPM: 66.9
Samples: 4

Max nTPM: 93.6
Min nTPM: 50.2
Sample A Female 61.5
Sample B Female 93.6
Sample C Male 50.2
Sample D Male 62.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 36.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 36.9
Samples: 4

Max nTPM: 38.5
Min nTPM: 35.2
Sample A Male 35.2
Sample B Male 36.7
Sample C Female 38.5
Sample D Female 37.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
69981013 Antisense, RP_050512_04_E02, Mouse strain C57BL/6J (56 days, male) 0.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.