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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:249.2 nTPM
HPA:249.2 nTPM
GTEx:509.1 nTPM
FANTOM5:556.0 Scaled Tags Per Million
Pig:203.1 nTPM
Mouse:623.1 nTPM
Allen mouse:0.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA043640Antibody HPA046280Antibody CAB010768
Glial cells Not detectedNot detectedMedium
Neuronal cells LowMediumLow





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 249.2
Sample id Sample description nTPM
Hippocampus
nTPM: 184.8
2621 Female, age 67, right hemisphere 253.3
1898 Male, age 80, left hemisphere 220.1
1911 Female, age 85, right hemisphere 179.2
2529 Female, age 94, left hemisphere 171.7
1855 Male, age 76, left hemisphere 164.8
2148 Female, age 91, left hemisphere 119.6
Dentate gyrus
nTPM: 199.4
2530 Female, age 94, left hemisphere 327.0
2246 Female, age 85, both hemispheres 220.8
2010 Male, age 76, both hemispheres 210.9
2528 Male, age 74, both hemispheres 169.1
1927 Female, age 91, both hemispheres 139.7
2531 Female, age 67, both hemispheres 129.1
Entorhinal gyrus
nTPM: 249.2
2613 Female, age 94, left hemisphere 346.3
2764 Male, age 80, right hemisphere 333.4
2117 Female, age 91, right hemisphere 245.3
1938 Female, age 85, left hemisphere 231.4
1787 Male, age 76, left hemisphere 214.4
2686 Male, age 75, right hemisphere 124.5
Hippocampus, CA1
nTPM: 188.8
2749 Male, age 80, left hemisphere 367.6
2527 Male, age 74, both hemispheres 192.3
1873 Female, age 85, both hemispheres 162.7
2082 Female, age 91, right hemisphere 124.7
2045 Male, age 76, both hemispheres 96.5
Hippocampus, CA2
nTPM: 195.5
1892 Male, age 76, both hemispheres 213.5
2249 Male, age 74, both hemispheres 210.8
2437 Female, age 94, left hemisphere 207.6
1963 Male, age 80, left hemisphere 202.4
1940 Female, age 85, left hemisphere 191.4
2113 Female, age 91, right hemisphere 147.4
Hippocampus, CA3
nTPM: 166.9
2137 Male, age 80, left hemisphere 311.6
1867 Male, age 76, both hemispheres 180.2
1891 Female, age 85, both hemispheres 178.5
2620 Female, age 94, left hemisphere 141.6
2436 Male, age 74, both hemispheres 117.8
2861 Female, age 67, both hemispheres 71.7
Parahippocampal cortex
nTPM: 223.8
2532 Female, age 72, left hemisphere 369.4
2245 Female, age 91, both hemispheres 314.5
1850 Male, age 80, both hemispheres 227.2
2250 Female, age 67, right hemisphere 214.5
1990 Female, age 91, right hemisphere 212.2
2692 Male, age 74, both hemispheres 206.1
1933 Female, age 85, both hemispheres 203.3
2693 Female, age 94, both hemispheres 192.7
2018 Male, age 76, both hemispheres 187.8
2622 Female, age 67, right hemisphere 110.0
Perirhinal gyrus
nTPM: 229.7
2521 Female, age 94, right hemisphere 334.1
1794 Male, age 80, right hemisphere 253.7
1847 Female, age 91, left hemisphere 192.4
2848 Male, age 76, right hemisphere 186.6
1841 Female, age 85, right hemisphere 181.5
Subiculum
nTPM: 241.3
2042 Male, age 76, both hemispheres 328.3
1901 Male, age 80, both hemispheres 320.0
1977 Female, age 85, both hemispheres 279.1
2438 Female, age 94, left hemisphere 250.2
2619 Male, age 74, both hemispheres 196.3
2729 Female, age 91, right hemisphere 73.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 509.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 509.1
Samples: 197

Max nTPM: 1140.2
Min nTPM: 53.8
Std nTPM: 224.6
Median nTPM: 465.0
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 1140.2
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 1110.5
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 1065.7
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 1064.2
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 1036.4
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 1026.0
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 1021.4
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 1017.1
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 980.6
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 947.9
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 896.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 556.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 556.0
FF:10169-103B7 60 years, female 640.3
FF:10153-102I9 76 years, female 471.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 203.1
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 203.1
Samples: 4

Max nTPM: 291.0
Min nTPM: 87.0
Sample A Female 291.0
Sample B Female 149.5
Sample C Male 285.0
Sample D Male 87.0
Entorhinal cortex
nTPM: 93.3
Samples: 4

Max nTPM: 102.9
Min nTPM: 85.3
Sample A Female 85.7
Sample B Female 102.9
Sample C Male 85.3
Sample D Male 99.2
Subiculum
nTPM: 107.3
Samples: 4

Max nTPM: 128.5
Min nTPM: 92.1
Sample A Female 128.5
Sample B Female 112.8
Sample C Male 92.1
Sample D Male 95.8
Ventral hippocampus
nTPM: 142.4
Samples: 4

Max nTPM: 205.4
Min nTPM: 70.9
Sample A Female 140.8
Sample B Female 70.9
Sample C Male 152.6
Sample D Male 205.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 623.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 517.3
Samples: 4

Max nTPM: 580.8
Min nTPM: 438.0
Sample A Male 556.7
Sample B Male 493.5
Sample C Female 438.0
Sample D Female 580.8
Hippocampal formation
nTPM: 623.1
Samples: 4

Max nTPM: 754.4
Min nTPM: 506.4
Sample A Male 506.4
Sample B Male 627.0
Sample C Female 754.4
Sample D Female 604.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.7
1081 Antisense, RP_Baylor_103091, Mouse strain C57BL/6J (56 days, male) 1.4
1082 Antisense, RP_Baylor_103091, Mouse strain C57BL/6J (56 days, male) 1.1
1083 Sense, RPS_Baylor_37062, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.