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CLPTM1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:58.4 nTPM
HPA:58.4 nTPM
GTEx:106.7 nTPM
FANTOM5:106.6 Scaled Tags Per Million
Pig:114.0 nTPM
Mouse:42.6 nTPM
Allen mouse:8.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 58.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 49.3
2586 Male, age 75, left hemisphere 78.8
2666 Male, age 74, left hemisphere 67.6
2828 Female, age 72, unknown 54.0
2219 Male, age 76, both hemispheres 51.0
1827 Male, age 72, unknown 46.0
1870 Female, age 42, unknown 45.2
1833 Male, age 53, unknown 42.4
2019 Male, age 18, unknown 37.6
2411 Female, age 72, unknown 35.6
1830 Male, age 51, unknown 34.7
Dorsal raphe nucleus
nTPM: 41.8
2047 Male, age 72, unknown 50.1
2750 Male, age 76, both hemispheres 45.8
1828 Male, age 53, unknown 42.5
2298 Female, age 72, unknown 39.5
2016 Female, age 72, unknown 31.2
Inferior colliculus
nTPM: 36.5
2849 Male, age 72, unknown 44.0
1848 Female, age 42, unknown 38.7
1890 Male, age 53, unknown 35.2
2097 Female, age 72, unknown 28.1
Median raphe nucleus
nTPM: 58.4
2220 Male, age 76, midline 58.4
Pedunculopontine tegmental nucleus
nTPM: 44.3
2334 Male, age 80, both hemispheres 47.1
1921 Female, age 85, both hemispheres 45.7
2338 Male, age 61, both hemispheres 40.2
Periaquaductal grey, anterior
nTPM: 45.7
1947 Male, age 18, unknown 55.3
1795 Male, age 51, unknown 49.1
2502 Female, age 75, unknown 32.8
Periaquaductal grey, dorsal
nTPM: 33.8
1840 Male, age 53, unknown 38.5
1831 Male, age 72, unknown 35.8
2850 Male, age 76, both hemispheres 34.5
2464 Female, age 72, unknown 26.4
Periaquaductal grey, lateral
nTPM: 28.3
2053 Male, age 18, unknown 33.7
2272 Male, age 74, both hemispheres 28.1
2140 Male, age 76, both hemispheres 22.9
Pretectal area
nTPM: 47.7
1816 Male, age 51, unknown 67.4
1944 Female, age 72, unknown 65.0
1817 Female, age 42, unknown 63.6
2667 Female, age 75, unknown 57.1
2007 Male, age 72, unknown 55.2
1815 Male, age 53, unknown 53.5
2407 Male, age 75, both hemispheres 42.9
2825 Male, age 18, unknown 41.0
2224 Female, age 72, unknown 33.6
2316 Male, age 76, right hemisphere 24.3
2273 Male, age 74, both hemispheres 21.5
Red nucleus
nTPM: 41.6
2584 Male, age 75, left hemisphere 62.5
2588 Male, age 74, left hemisphere 47.1
2725 Female, age 75, unknown 44.5
1821 Female, age 72, unknown 43.6
1904 Male, age 53, unknown 40.0
1954 Female, age 42, unknown 39.9
2785 Male, age 18, unknown 39.1
2227 Male, age 72, unknown 37.3
2769 Male, age 72, unknown 36.9
1865 Male, age 51, unknown 36.8
2503 Female, age 72, unknown 36.6
2823 Male, age 76, right hemisphere 35.4
Substantia nigra
nTPM: 46.9
2665 Male, age 74, both hemispheres 67.7
1916 Female, age 42, unknown 61.7
1889 Female, age 72, unknown 54.8
1851 Male, age 51, unknown 52.0
2583 Male, age 75, right hemisphere 51.4
2699 Male, age 18, unknown 45.6
1941 Male, age 53, unknown 44.9
2241 Male, age 72, unknown 39.0
2590 Female, age 75, unknown 32.9
2409 Female, age 72, unknown 18.9
Superior colliculus
nTPM: 46.9
2668 Female, age 75, unknown 61.7
2664 Male, age 75, both hemispheres 59.6
2087 Female, age 72, unknown 53.9
1796 Male, age 53, unknown 50.1
2261 Male, age 18, unknown 47.8
1913 Female, age 42, unknown 41.9
2587 Male, age 74, left hemisphere 39.6
1895 Male, age 76, right hemisphere 39.2
1839 Male, age 51, unknown 38.3
1995 Male, age 72, unknown 36.7
Ventral tegmental area
nTPM: 43.9
2218 Male, age 76, both hemispheres 53.2
1915 Female, age 42, unknown 49.0
2223 Female, age 72, unknown 43.5
1942 Male, age 51, unknown 42.6
2410 Female, age 72, unknown 39.4
2021 Male, age 53, unknown 35.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 106.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 106.7
Samples: 139

Max nTPM: 171.8
Min nTPM: 46.6
Std nTPM: 25.3
Median nTPM: 105.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 171.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 171.1
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 166.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 166.5
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 162.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 158.9
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 154.9
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 151.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 150.7
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 146.4
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 145.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 106.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 106.6
FF:10158-103A5 76 years, female 106.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 114.0
Pig sample Sample description nTPM
Midbrain
nTPM: 114.0
Samples: 4

Max nTPM: 142.3
Min nTPM: 83.6
Sample A Female 131.9
Sample B Female 83.6
Sample C Male 142.3
Sample D Male 98.2
Periaqueductal gray
nTPM: 79.1
Samples: 3

Max nTPM: 87.4
Min nTPM: 72.6
Sample B Female 77.2
Sample C Male 87.4
Sample D Male 72.6
Substantia nigra
nTPM: 104.6
Samples: 4

Max nTPM: 119.5
Min nTPM: 77.5
Sample A Female 118.7
Sample B Female 77.5
Sample C Male 119.5
Sample D Male 102.8
Superior colliculi
nTPM: 112.4
Samples: 4

Max nTPM: 132.8
Min nTPM: 82.7
Sample A Female 120.7
Sample B Female 82.7
Sample C Male 132.8
Sample D Male 113.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 42.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 42.6
Samples: 4

Max nTPM: 45.2
Min nTPM: 40.0
Sample A Male 40.0
Sample B Male 42.2
Sample C Female 45.2
Sample D Female 43.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.6
71608394 Antisense, RP_050927_01_F11, Mouse strain C57BL/6J (56 days, male) 11.8
544901 Antisense, RP_040617_02_G04, Mouse strain C57BL/6J (56 days, male) 5.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.