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CLIP3
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:158.4 nTPM
HPA:158.4 nTPM
GTEx:121.6 nTPM
FANTOM5:143.0 Scaled Tags Per Million
Pig:91.7 nTPM
Mouse:276.8 nTPM

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 158.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 82.6
2219 Male, age 76, both hemispheres 126.3
2586 Male, age 75, left hemisphere 115.8
2666 Male, age 74, left hemisphere 96.9
1827 Male, age 72, unknown 91.1
2828 Female, age 72, unknown 83.0
1833 Male, age 53, unknown 72.5
1870 Female, age 42, unknown 69.4
2411 Female, age 72, unknown 68.4
1830 Male, age 51, unknown 54.4
2019 Male, age 18, unknown 47.8
Dorsal raphe nucleus
nTPM: 84.3
2047 Male, age 72, unknown 113.1
2298 Female, age 72, unknown 94.7
2750 Male, age 76, both hemispheres 93.4
1828 Male, age 53, unknown 72.9
2016 Female, age 72, unknown 47.6
Inferior colliculus
nTPM: 67.1
2849 Male, age 72, unknown 79.7
1848 Female, age 42, unknown 66.7
1890 Male, age 53, unknown 66.2
2097 Female, age 72, unknown 56.0
Median raphe nucleus
nTPM: 158.4
2220 Male, age 76, midline 158.4
Pedunculopontine tegmental nucleus
nTPM: 79.5
2334 Male, age 80, both hemispheres 92.3
1921 Female, age 85, both hemispheres 85.4
2338 Male, age 61, both hemispheres 60.7
Periaquaductal grey, anterior
nTPM: 80.6
1947 Male, age 18, unknown 89.6
1795 Male, age 51, unknown 87.9
2502 Female, age 75, unknown 64.4
Periaquaductal grey, dorsal
nTPM: 71.1
2850 Male, age 76, both hemispheres 88.2
1840 Male, age 53, unknown 76.4
1831 Male, age 72, unknown 68.3
2464 Female, age 72, unknown 51.4
Periaquaductal grey, lateral
nTPM: 52.7
2053 Male, age 18, unknown 60.1
2140 Male, age 76, both hemispheres 57.5
2272 Male, age 74, both hemispheres 40.5
Pretectal area
nTPM: 80.6
1816 Male, age 51, unknown 109.8
1944 Female, age 72, unknown 97.1
2667 Female, age 75, unknown 95.3
1815 Male, age 53, unknown 93.5
2007 Male, age 72, unknown 89.5
1817 Female, age 42, unknown 86.4
2407 Male, age 75, both hemispheres 80.8
2825 Male, age 18, unknown 75.9
2224 Female, age 72, unknown 72.8
2316 Male, age 76, right hemisphere 43.5
2273 Male, age 74, both hemispheres 41.7
Red nucleus
nTPM: 57.1
2584 Male, age 75, left hemisphere 86.8
2725 Female, age 75, unknown 64.0
1821 Female, age 72, unknown 60.8
2785 Male, age 18, unknown 57.2
2823 Male, age 76, right hemisphere 55.2
1954 Female, age 42, unknown 53.9
1865 Male, age 51, unknown 52.4
1904 Male, age 53, unknown 52.0
2588 Male, age 74, left hemisphere 51.0
2503 Female, age 72, unknown 50.8
2769 Male, age 72, unknown 50.8
2227 Male, age 72, unknown 50.0
Substantia nigra
nTPM: 109.1
1916 Female, age 42, unknown 179.2
1851 Male, age 51, unknown 131.5
2699 Male, age 18, unknown 127.0
1941 Male, age 53, unknown 108.1
2665 Male, age 74, both hemispheres 103.4
1889 Female, age 72, unknown 102.6
2241 Male, age 72, unknown 101.4
2583 Male, age 75, right hemisphere 91.2
2409 Female, age 72, unknown 76.4
2590 Female, age 75, unknown 70.4
Superior colliculus
nTPM: 75.9
1796 Male, age 53, unknown 103.3
2668 Female, age 75, unknown 101.0
2664 Male, age 75, both hemispheres 96.5
2087 Female, age 72, unknown 83.4
2261 Male, age 18, unknown 78.8
1895 Male, age 76, right hemisphere 69.9
1839 Male, age 51, unknown 63.4
2587 Male, age 74, left hemisphere 60.2
1913 Female, age 42, unknown 59.5
1995 Male, age 72, unknown 42.6
Ventral tegmental area
nTPM: 99.7
2218 Male, age 76, both hemispheres 134.2
1915 Female, age 42, unknown 120.6
2410 Female, age 72, unknown 97.4
1942 Male, age 51, unknown 89.3
2223 Female, age 72, unknown 85.9
2021 Male, age 53, unknown 70.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 121.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 121.6
Samples: 139

Max nTPM: 355.0
Min nTPM: 49.9
Std nTPM: 54.8
Median nTPM: 102.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 355.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 271.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 268.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 253.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 251.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 246.6
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 246.1
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 236.7
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 232.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 224.9
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 216.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 143.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 143.0
FF:10158-103A5 76 years, female 143.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 91.7
Pig sample Sample description nTPM
Midbrain
nTPM: 91.7
Samples: 4

Max nTPM: 109.6
Min nTPM: 75.3
Sample A Female 101.3
Sample B Female 75.3
Sample C Male 109.6
Sample D Male 80.7
Periaqueductal gray
nTPM: 73.2
Samples: 3

Max nTPM: 87.5
Min nTPM: 62.6
Sample B Female 69.5
Sample C Male 87.5
Sample D Male 62.6
Substantia nigra
nTPM: 89.8
Samples: 4

Max nTPM: 120.5
Min nTPM: 61.1
Sample A Female 106.2
Sample B Female 61.1
Sample C Male 120.5
Sample D Male 71.3
Superior colliculi
nTPM: 80.4
Samples: 4

Max nTPM: 99.7
Min nTPM: 37.3
Sample A Female 87.4
Sample B Female 37.3
Sample C Male 99.7
Sample D Male 97.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 276.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 276.8
Samples: 4

Max nTPM: 290.9
Min nTPM: 260.2
Sample A Male 275.6
Sample B Male 260.2
Sample C Female 290.9
Sample D Female 280.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.