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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
RNA expressioni
Consensus:56.5 nTPM
HPA:56.5 nTPM
GTEx:51.2 nTPM
FANTOM5:142.8 Scaled Tags Per Million
Pig:20.7 nTPM
Mouse:113.3 nTPM
Allen mouse:3.7 Expression energy

CAUDATE - Antibody stainingi
Antibody CAB017455
Glial cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 56.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 56.2
2846 Female, age 79, unknown 60.4
2290 Female, age 72, unknown 59.1
2288 Male, age 75, left hemisphere 56.6
1854 Male, age 80, left hemisphere 55.1
2289 Male, age 61, right hemisphere 55.1
1857 Female, age 85, left hemisphere 55.0
2481 Female, age 94, left hemisphere 55.0
1781 Male, age 74, unknown 53.3
Claustrum
nTPM: 53.8
2292 Female, age 85, both hemispheres 57.6
2645 Female, age 72, unknown 56.8
2198 Male, age 80, both hemispheres 56.4
2284 Female, age 91, both hemispheres 54.4
2196 Female, age 79, unknown 53.9
2568 Male, age 61, both hemispheres 53.9
1956 Male, age 74, unknown 51.7
2491 Male, age 75, both hemispheres 50.5
2392 Female, age 94, both hemispheres 49.0
Globus pallidus, externus
nTPM: 56.0
2395 Male, age 75, both hemispheres 59.0
1996 Male, age 80, right hemisphere 58.8
2646 Male, age 61, right hemisphere 56.0
2567 Female, age 72, unknown 53.2
2772 Female, age 79, unknown 53.0
Globus pallidus, internus
nTPM: 56.5
2287 Male, age 75, right hemisphere 58.4
2111 Female, age 85, right hemisphere 57.5
1818 Male, age 74, unknown 56.3
2483 Female, age 94, right hemisphere 56.1
2037 Male, age 80, right hemisphere 55.9
2566 Female, age 72, unknown 55.7
2778 Female, age 91, both hemispheres 55.3
Nucleus accumbens
nTPM: 54.4
2698 Female, age 72, unknown 58.6
1806 Female, age 85, left hemisphere 56.5
2286 Male, age 75, left hemisphere 56.1
1783 Male, age 74, unknown 55.0
2732 Male, age 80, right hemisphere 54.8
2824 Male, age 61, right hemisphere 52.4
1856 Female, age 91, right hemisphere 51.7
2391 Female, age 94, left hemisphere 50.4
Nucleus basalis of Meynert
nTPM: 56.1
2569 Male, age 61, both hemispheres 58.3
2484 Female, age 94, left hemisphere 56.4
2393 Male, age 80, right hemisphere 54.9
2821 Male, age 75, both hemispheres 54.9
Nucleus of the diagonal band
nTPM: 53.7
1979 Male, age 74, unknown 55.8
2195 Female, age 85, both hemispheres 54.9
2775 Male, age 80, right hemisphere 53.6
1812 Female, age 91, both hemispheres 52.8
2029 Male, age 61, right hemisphere 51.3
Olfactory tubercle
nTPM: 52.3
2856 Male, age 75, right hemisphere 55.1
1846 Male, age 80, right hemisphere 54.3
2487 Female, age 94, left hemisphere 50.7
1998 Female, age 91, both hemispheres 49.0
Putamen
nTPM: 55.2
1838 Male, age 80, right hemisphere 57.0
1829 Male, age 74, unknown 56.4
2489 Female, age 72, unknown 56.1
2647 Male, age 75, left hemisphere 55.4
2482 Female, age 94, left hemisphere 54.6
2466 Female, age 79, unknown 54.5
1937 Female, age 91, right hemisphere 52.6
Septal nuclei
nTPM: 53.5
2059 Female, age 85, both hemispheres 55.5
1960 Male, age 74, unknown 55.2
2199 Male, age 80, right hemisphere 55.2
2629 Female, age 94, right hemisphere 54.8
2394 Male, age 61, left hemisphere 53.8
2031 Female, age 72, unknown 51.0
2009 Female, age 91, both hemispheres 49.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 51.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 48.2
Samples: 246

Max nTPM: 82.4
Min nTPM: 32.8
Std nTPM: 7.1
Median nTPM: 47.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 82.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 76.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 68.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 68.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 67.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 67.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 64.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 63.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 63.0
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 61.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 59.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 48.1
Samples: 246

Max nTPM: 77.3
Min nTPM: 33.5
Std nTPM: 7.4
Median nTPM: 47.3
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 77.3
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 70.5
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 68.9
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 68.3
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 67.2
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 67.0
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 65.3
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 64.9
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 64.7
GTEX-13NYS-0011-R6b-SM-5MR3R 60-69 years, male 63.9
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 63.8
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Brain - Putamen (basal ganglia)
Average nTPM: 51.2
Samples: 205

Max nTPM: 95.5
Min nTPM: 36.6
Std nTPM: 7.8
Median nTPM: 50.4
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 95.5
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 76.4
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 74.1
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 70.6
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 69.7
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 69.4
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 64.6
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 64.4
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 64.3
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 63.6
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 63.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 142.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 142.8
FF:10164-103B2 76 years, female 142.8
Globus pallidus
Scaled Tags Per Million: 123.4
FF:10175-103C4 60 years, female 131.8
FF:10161-103A8 76 years, female 115.0
Nucleus accumbens
Scaled Tags Per Million: 139.7
FF:10037-101F1 23-56 years, mixed 139.7
Putamen
Scaled Tags Per Million: 127.6
FF:10176-103C5 60 years, female 127.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 20.7
Pig sample Sample description nTPM
Caudate
nTPM: 19.1
Samples: 4

Max nTPM: 23.6
Min nTPM: 16.5
Sample A Female 16.5
Sample B Female 19.2
Sample C Male 23.6
Sample D Male 16.9
Putamen
nTPM: 20.7
Samples: 4

Max nTPM: 24.1
Min nTPM: 16.3
Sample A Female 20.6
Sample B Female 16.3
Sample C Male 21.9
Sample D Male 24.1
Septum
nTPM: 20.3
Samples: 4

Max nTPM: 23.4
Min nTPM: 18.4
Sample A Female 19.5
Sample B Female 18.4
Sample C Male 23.4
Sample D Male 20.0
Ventral pallidum
nTPM: 19.5
Samples: 4

Max nTPM: 23.4
Min nTPM: 15.7
Sample A Female 15.7
Sample B Female 18.7
Sample C Male 23.4
Sample D Male 20.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 113.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 105.0
Samples: 4

Max nTPM: 113.8
Min nTPM: 98.5
Sample A Male 98.5
Sample B Male 102.7
Sample C Female 104.9
Sample D Female 113.8
Septum
nTPM: 113.3
Samples: 4

Max nTPM: 122.5
Min nTPM: 104.6
Sample A Male 104.6
Sample B Male 113.4
Sample C Female 122.5
Sample D Female 112.5
Ventral forebrain
nTPM: 105.7
Samples: 4

Max nTPM: 115.6
Min nTPM: 99.6
Sample A Male 105.7
Sample B Male 102.0
Sample C Female 115.6
Sample D Female 99.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 3.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 3.7
119687 Antisense, RP_040507_01_C02, Mouse strain C57BL/6J (56 days, male) 3.7
130912 Antisense, RP_040507_01_C02, Mouse strain C57BL/6J (56 days, male) 2.4
Pallidum
Expression energy: 3.0
119687 Antisense, RP_040507_01_C02, Mouse strain C57BL/6J (56 days, male) 3.0
130912 Antisense, RP_040507_01_C02, Mouse strain C57BL/6J (56 days, male) 2.0

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.