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KCNN1
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:30.6 nTPM
HPA:30.6 nTPM
GTEx:29.5 nTPM
FANTOM5:21.0 Scaled Tags Per Million
Pig:9.1 nTPM
Mouse:8.8 nTPM
Allen mouse:0.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 30.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 1.1
2290 Female, age 72, unknown 8.3
1781 Male, age 74, unknown 0.9
1854 Male, age 80, left hemisphere 0.0
1857 Female, age 85, left hemisphere 0.0
2288 Male, age 75, left hemisphere 0.0
2289 Male, age 61, right hemisphere 0.0
2481 Female, age 94, left hemisphere 0.0
2846 Female, age 79, unknown 0.0
Claustrum
nTPM: 30.6
2645 Female, age 72, unknown 73.3
2284 Female, age 91, both hemispheres 54.4
2568 Male, age 61, both hemispheres 45.3
2198 Male, age 80, both hemispheres 34.9
2491 Male, age 75, both hemispheres 27.0
1956 Male, age 74, unknown 24.8
2292 Female, age 85, both hemispheres 10.4
2392 Female, age 94, both hemispheres 4.6
2196 Female, age 79, unknown 0.4
Globus pallidus, externus
nTPM: 0.0
1996 Male, age 80, right hemisphere 0.0
2395 Male, age 75, both hemispheres 0.0
2567 Female, age 72, unknown 0.0
2646 Male, age 61, right hemisphere 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.0
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2483 Female, age 94, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 0.0
1783 Male, age 74, unknown 0.0
1806 Female, age 85, left hemisphere 0.0
1856 Female, age 91, right hemisphere 0.0
2286 Male, age 75, left hemisphere 0.0
2391 Female, age 94, left hemisphere 0.0
2698 Female, age 72, unknown 0.0
2732 Male, age 80, right hemisphere 0.0
2824 Male, age 61, right hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 0.0
2393 Male, age 80, right hemisphere 0.0
2484 Female, age 94, left hemisphere 0.0
2569 Male, age 61, both hemispheres 0.0
2821 Male, age 75, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 17.3
2029 Male, age 61, right hemisphere 29.6
2195 Female, age 85, both hemispheres 27.0
2775 Male, age 80, right hemisphere 23.6
1812 Female, age 91, both hemispheres 6.2
1979 Male, age 74, unknown 0.0
Olfactory tubercle
nTPM: 23.0
2856 Male, age 75, right hemisphere 32.5
1998 Female, age 91, both hemispheres 26.3
2487 Female, age 94, left hemisphere 21.6
1846 Male, age 80, right hemisphere 11.4
Putamen
nTPM: 2.2
2489 Female, age 72, unknown 13.1
2647 Male, age 75, left hemisphere 2.3
1829 Male, age 74, unknown 0.0
1838 Male, age 80, right hemisphere 0.0
1937 Female, age 91, right hemisphere 0.0
2466 Female, age 79, unknown 0.0
2482 Female, age 94, left hemisphere 0.0
Septal nuclei
nTPM: 15.0
1960 Male, age 74, unknown 43.5
2059 Female, age 85, both hemispheres 29.6
2031 Female, age 72, unknown 18.6
2629 Female, age 94, right hemisphere 9.7
2009 Female, age 91, both hemispheres 3.4
2199 Male, age 80, right hemisphere 0.0
2394 Male, age 61, left hemisphere 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 29.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 29.0
Samples: 246

Max nTPM: 70.2
Min nTPM: 3.6
Std nTPM: 14.1
Median nTPM: 27.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 70.2
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 69.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 69.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 68.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 65.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 65.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 64.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 59.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 58.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 58.2
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 56.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 26.7
Samples: 246

Max nTPM: 66.9
Min nTPM: 1.8
Std nTPM: 10.9
Median nTPM: 25.9
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 66.9
GTEX-13NYB-0011-R6b-SM-5MR51 40-49 years, male 61.5
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 56.8
GTEX-12ZZZ-0011-R6b-SM-5EQ5B 60-69 years, male 53.8
GTEX-1MJK2-0011-R6a-SM-EXUS3 50-59 years, male 53.0
GTEX-1I1GR-0011-R6a-SM-CMKHI 60-69 years, male 52.6
GTEX-1HT8W-0011-R6a-SM-CM2SY 30-39 years, male 52.5
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 52.2
GTEX-11OF3-0011-R6b-SM-57WBG 60-69 years, male 49.5
GTEX-R55E-0011-R6A-SM-2TC5T 20-29 years, male 49.2
GTEX-12WSC-0011-R6b-SM-5LU99 50-59 years, male 48.8
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Brain - Putamen (basal ganglia)
Average nTPM: 29.5
Samples: 205

Max nTPM: 89.7
Min nTPM: 5.9
Std nTPM: 14.6
Median nTPM: 27.6
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 89.7
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 83.9
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 65.9
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 65.0
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 64.5
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 63.7
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 59.5
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 58.7
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 57.1
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 56.0
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 54.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 21.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 16.4
FF:10164-103B2 76 years, female 16.4
Globus pallidus
Scaled Tags Per Million: 10.8
FF:10175-103C4 60 years, female 16.5
FF:10161-103A8 76 years, female 5.0
Nucleus accumbens
Scaled Tags Per Million: 21.0
FF:10037-101F1 23-56 years, mixed 21.0
Putamen
Scaled Tags Per Million: 15.6
FF:10176-103C5 60 years, female 15.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 9.1
Pig sample Sample description nTPM
Caudate
nTPM: 7.1
Samples: 4

Max nTPM: 9.3
Min nTPM: 4.6
Sample A Female 4.6
Sample B Female 8.0
Sample C Male 9.3
Sample D Male 6.5
Putamen
nTPM: 9.1
Samples: 4

Max nTPM: 15.3
Min nTPM: 3.7
Sample A Female 3.7
Sample B Female 7.7
Sample C Male 15.3
Sample D Male 9.6
Septum
nTPM: 4.3
Samples: 4

Max nTPM: 5.6
Min nTPM: 3.3
Sample A Female 4.0
Sample B Female 4.4
Sample C Male 3.3
Sample D Male 5.6
Ventral pallidum
nTPM: 5.1
Samples: 4

Max nTPM: 6.9
Min nTPM: 4.0
Sample A Female 4.0
Sample B Female 5.2
Sample C Male 6.9
Sample D Male 4.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 8.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 7.4
Samples: 4

Max nTPM: 9.0
Min nTPM: 6.5
Sample A Male 6.6
Sample B Male 7.6
Sample C Female 9.0
Sample D Female 6.5
Septum
nTPM: 7.8
Samples: 4

Max nTPM: 11.5
Min nTPM: 6.0
Sample A Male 11.5
Sample B Male 6.0
Sample C Female 6.6
Sample D Female 6.9
Ventral forebrain
nTPM: 8.9
Samples: 4

Max nTPM: 10.0
Min nTPM: 7.1
Sample A Male 8.9
Sample B Male 7.1
Sample C Female 10.0
Sample D Female 9.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
69860427 Antisense, RP_050331_03_G02, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.1
69860427 Antisense, RP_050331_03_G02, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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