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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.5 nTPM
HPA:11.5 nTPM
GTEx:11.1 nTPM
FANTOM5:34.0 Scaled Tags Per Million
Pig:24.3 nTPM

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 11.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 10.3
1870 Female, age 42, unknown 11.8
1833 Male, age 53, unknown 11.0
1830 Male, age 51, unknown 10.9
2411 Female, age 72, unknown 10.5
1827 Male, age 72, unknown 10.1
2219 Male, age 76, both hemispheres 10.0
2586 Male, age 75, left hemisphere 10.0
2666 Male, age 74, left hemisphere 9.9
2019 Male, age 18, unknown 9.8
2828 Female, age 72, unknown 9.2
Dorsal raphe nucleus
nTPM: 11.1
2298 Female, age 72, unknown 11.7
2750 Male, age 76, both hemispheres 11.3
1828 Male, age 53, unknown 11.0
2016 Female, age 72, unknown 10.9
2047 Male, age 72, unknown 10.7
Inferior colliculus
nTPM: 10.8
1848 Female, age 42, unknown 11.2
2097 Female, age 72, unknown 10.9
2849 Male, age 72, unknown 10.7
1890 Male, age 53, unknown 10.3
Median raphe nucleus
nTPM: 11.5
2220 Male, age 76, midline 11.5
Pedunculopontine tegmental nucleus
nTPM: 10.7
1921 Female, age 85, both hemispheres 11.0
2334 Male, age 80, both hemispheres 10.8
2338 Male, age 61, both hemispheres 10.4
Periaquaductal grey, anterior
nTPM: 10.2
1947 Male, age 18, unknown 10.8
2502 Female, age 75, unknown 10.3
1795 Male, age 51, unknown 9.5
Periaquaductal grey, dorsal
nTPM: 10.9
2850 Male, age 76, both hemispheres 11.5
1840 Male, age 53, unknown 11.2
2464 Female, age 72, unknown 10.5
1831 Male, age 72, unknown 10.2
Periaquaductal grey, lateral
nTPM: 10.6
2140 Male, age 76, both hemispheres 10.8
2053 Male, age 18, unknown 10.7
2272 Male, age 74, both hemispheres 10.4
Pretectal area
nTPM: 10.5
2273 Male, age 74, both hemispheres 11.5
2667 Female, age 75, unknown 11.5
2224 Female, age 72, unknown 11.1
1817 Female, age 42, unknown 10.7
2825 Male, age 18, unknown 10.6
1815 Male, age 53, unknown 10.4
1816 Male, age 51, unknown 10.4
1944 Female, age 72, unknown 10.3
2007 Male, age 72, unknown 10.1
2316 Male, age 76, right hemisphere 10.1
2407 Male, age 75, both hemispheres 9.3
Red nucleus
nTPM: 10.4
1954 Female, age 42, unknown 11.2
1821 Female, age 72, unknown 11.0
1904 Male, age 53, unknown 10.9
2769 Male, age 72, unknown 10.9
1865 Male, age 51, unknown 10.8
2503 Female, age 72, unknown 10.5
2227 Male, age 72, unknown 10.4
2725 Female, age 75, unknown 10.1
2588 Male, age 74, left hemisphere 10.0
2823 Male, age 76, right hemisphere 9.9
2785 Male, age 18, unknown 9.8
2584 Male, age 75, left hemisphere 9.5
Substantia nigra
nTPM: 10.5
2241 Male, age 72, unknown 11.7
1889 Female, age 72, unknown 11.1
2699 Male, age 18, unknown 10.8
1851 Male, age 51, unknown 10.5
2665 Male, age 74, both hemispheres 10.4
2409 Female, age 72, unknown 10.2
1941 Male, age 53, unknown 10.0
2583 Male, age 75, right hemisphere 10.0
2590 Female, age 75, unknown 10.0
1916 Female, age 42, unknown 9.8
Superior colliculus
nTPM: 10.3
1913 Female, age 42, unknown 11.3
1895 Male, age 76, right hemisphere 10.9
1995 Male, age 72, unknown 10.3
2587 Male, age 74, left hemisphere 10.3
2261 Male, age 18, unknown 10.2
1839 Male, age 51, unknown 10.1
2087 Female, age 72, unknown 10.1
2668 Female, age 75, unknown 10.0
1796 Male, age 53, unknown 9.9
2664 Male, age 75, both hemispheres 9.9
Ventral tegmental area
nTPM: 10.7
2218 Male, age 76, both hemispheres 11.0
2410 Female, age 72, unknown 10.8
1942 Male, age 51, unknown 10.7
2223 Female, age 72, unknown 10.7
2021 Male, age 53, unknown 10.6
1915 Female, age 42, unknown 10.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 11.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.1
Samples: 139

Max nTPM: 20.6
Min nTPM: 5.3
Std nTPM: 2.2
Median nTPM: 10.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 20.6
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 17.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 16.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 15.3
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 15.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 14.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 14.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 14.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 14.6
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 14.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 14.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 34.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 34.0
FF:10158-103A5 76 years, female 34.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 24.3
Pig sample Sample description nTPM
Midbrain
nTPM: 24.3
Samples: 4

Max nTPM: 29.9
Min nTPM: 21.7
Sample A Female 29.9
Sample B Female 22.9
Sample C Male 21.7
Sample D Male 22.7
Periaqueductal gray
nTPM: 23.9
Samples: 3

Max nTPM: 25.1
Min nTPM: 22.2
Sample B Female 22.2
Sample C Male 25.1
Sample D Male 24.3
Substantia nigra
nTPM: 22.7
Samples: 4

Max nTPM: 29.4
Min nTPM: 18.6
Sample A Female 29.4
Sample B Female 21.1
Sample C Male 21.7
Sample D Male 18.6
Superior colliculi
nTPM: 23.5
Samples: 4

Max nTPM: 30.8
Min nTPM: 18.8
Sample A Female 30.8
Sample B Female 20.0
Sample C Male 18.8
Sample D Male 24.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.