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TMEM176B
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:60.1 nTPM
HPA:60.1 nTPM
GTEx:61.3 nTPM
FANTOM5:74.5 Scaled Tags Per Million
Pig:44.8 nTPM
Mouse:77.1 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 60.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 45.1
2828 Female, age 72, unknown 51.7
1870 Female, age 42, unknown 47.5
1827 Male, age 72, unknown 46.9
2411 Female, age 72, unknown 46.0
2586 Male, age 75, left hemisphere 44.1
1830 Male, age 51, unknown 43.8
1833 Male, age 53, unknown 43.4
2019 Male, age 18, unknown 43.1
2666 Male, age 74, left hemisphere 43.0
2219 Male, age 76, both hemispheres 41.8
Dorsal raphe nucleus
nTPM: 59.3
1828 Male, age 53, unknown 68.6
2047 Male, age 72, unknown 63.8
2298 Female, age 72, unknown 60.5
2016 Female, age 72, unknown 55.8
2750 Male, age 76, both hemispheres 48.1
Inferior colliculus
nTPM: 60.1
2097 Female, age 72, unknown 74.0
1890 Male, age 53, unknown 66.3
1848 Female, age 42, unknown 52.5
2849 Male, age 72, unknown 47.7
Median raphe nucleus
nTPM: 49.4
2220 Male, age 76, midline 49.4
Pedunculopontine tegmental nucleus
nTPM: 55.1
2338 Male, age 61, both hemispheres 71.4
2334 Male, age 80, both hemispheres 48.9
1921 Female, age 85, both hemispheres 45.0
Periaquaductal grey, anterior
nTPM: 48.5
1795 Male, age 51, unknown 52.9
2502 Female, age 75, unknown 48.7
1947 Male, age 18, unknown 44.0
Periaquaductal grey, dorsal
nTPM: 52.3
2850 Male, age 76, both hemispheres 56.2
1831 Male, age 72, unknown 53.1
1840 Male, age 53, unknown 50.6
2464 Female, age 72, unknown 49.4
Periaquaductal grey, lateral
nTPM: 55.4
2053 Male, age 18, unknown 55.9
2140 Male, age 76, both hemispheres 55.8
2272 Male, age 74, both hemispheres 54.6
Pretectal area
nTPM: 49.8
2273 Male, age 74, both hemispheres 57.6
2224 Female, age 72, unknown 54.3
2667 Female, age 75, unknown 53.3
2316 Male, age 76, right hemisphere 52.2
1816 Male, age 51, unknown 50.1
2407 Male, age 75, both hemispheres 49.9
2825 Male, age 18, unknown 49.2
1944 Female, age 72, unknown 48.3
1817 Female, age 42, unknown 45.2
1815 Male, age 53, unknown 45.0
2007 Male, age 72, unknown 42.8
Red nucleus
nTPM: 45.8
2725 Female, age 75, unknown 49.9
2503 Female, age 72, unknown 48.9
2227 Male, age 72, unknown 48.5
2769 Male, age 72, unknown 48.0
1821 Female, age 72, unknown 46.6
1954 Female, age 42, unknown 46.0
2823 Male, age 76, right hemisphere 45.3
1865 Male, age 51, unknown 43.7
1904 Male, age 53, unknown 43.6
2584 Male, age 75, left hemisphere 43.6
2785 Male, age 18, unknown 43.5
2588 Male, age 74, left hemisphere 42.0
Substantia nigra
nTPM: 49.6
2699 Male, age 18, unknown 59.6
2665 Male, age 74, both hemispheres 51.7
1916 Female, age 42, unknown 51.3
1851 Male, age 51, unknown 51.0
2590 Female, age 75, unknown 49.8
2409 Female, age 72, unknown 49.5
2241 Male, age 72, unknown 47.4
1941 Male, age 53, unknown 46.2
2583 Male, age 75, right hemisphere 45.3
1889 Female, age 72, unknown 44.7
Superior colliculus
nTPM: 48.4
1995 Male, age 72, unknown 54.6
1913 Female, age 42, unknown 53.1
2087 Female, age 72, unknown 50.6
2261 Male, age 18, unknown 50.1
2664 Male, age 75, both hemispheres 48.8
1796 Male, age 53, unknown 48.6
2587 Male, age 74, left hemisphere 47.0
1839 Male, age 51, unknown 46.0
1895 Male, age 76, right hemisphere 44.2
2668 Female, age 75, unknown 41.2
Ventral tegmental area
nTPM: 52.2
1915 Female, age 42, unknown 56.5
2021 Male, age 53, unknown 56.2
1942 Male, age 51, unknown 51.2
2218 Male, age 76, both hemispheres 50.8
2223 Female, age 72, unknown 50.0
2410 Female, age 72, unknown 48.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 61.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 61.3
Samples: 139

Max nTPM: 157.2
Min nTPM: 5.3
Std nTPM: 30.5
Median nTPM: 51.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 157.2
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 151.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 139.7
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 134.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 134.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 131.5
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 124.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 122.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 120.6
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 118.4
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 117.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 74.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 74.5
FF:10158-103A5 76 years, female 74.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 44.8
Pig sample Sample description nTPM
Midbrain
nTPM: 39.7
Samples: 4

Max nTPM: 51.9
Min nTPM: 29.3
Sample A Female 36.2
Sample B Female 29.3
Sample C Male 51.9
Sample D Male 41.4
Periaqueductal gray
nTPM: 30.3
Samples: 3

Max nTPM: 38.9
Min nTPM: 24.5
Sample B Female 27.5
Sample C Male 38.9
Sample D Male 24.5
Substantia nigra
nTPM: 44.9
Samples: 4

Max nTPM: 71.5
Min nTPM: 23.0
Sample A Female 71.5
Sample B Female 31.8
Sample C Male 53.1
Sample D Male 23.0
Superior colliculi
nTPM: 40.7
Samples: 4

Max nTPM: 56.6
Min nTPM: 30.3
Sample A Female 43.6
Sample B Female 32.1
Sample C Male 56.6
Sample D Male 30.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 77.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 77.1
Samples: 4

Max nTPM: 84.5
Min nTPM: 71.9
Sample A Male 71.9
Sample B Male 77.0
Sample C Female 75.1
Sample D Female 84.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
74990508 Antisense, RP_060410_01_B11, Mouse strain C57BL/6J (56 days, male) 1.1
77866852 Antisense, RP_070129_01_E05, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.