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KDM4C
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.0 nTPM
HPA:12.0 nTPM
GTEx:7.9 nTPM
FANTOM5:58.5 Scaled Tags Per Million
Pig:13.1 nTPM
Mouse:15.6 nTPM
Allen mouse:0.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 12.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 9.6
2288 Male, age 75, left hemisphere 10.6
2289 Male, age 61, right hemisphere 10.4
1854 Male, age 80, left hemisphere 10.1
1857 Female, age 85, left hemisphere 9.6
2846 Female, age 79, unknown 9.6
2481 Female, age 94, left hemisphere 9.3
1781 Male, age 74, unknown 8.9
2290 Female, age 72, unknown 8.5
Claustrum
nTPM: 11.3
2292 Female, age 85, both hemispheres 12.2
1956 Male, age 74, unknown 12.1
2392 Female, age 94, both hemispheres 12.0
2491 Male, age 75, both hemispheres 11.5
2196 Female, age 79, unknown 11.1
2568 Male, age 61, both hemispheres 11.0
2284 Female, age 91, both hemispheres 10.8
2645 Female, age 72, unknown 10.8
2198 Male, age 80, both hemispheres 10.1
Globus pallidus, externus
nTPM: 11.1
2567 Female, age 72, unknown 12.6
2395 Male, age 75, both hemispheres 11.6
1996 Male, age 80, right hemisphere 10.8
2646 Male, age 61, right hemisphere 10.5
2772 Female, age 79, unknown 10.1
Globus pallidus, internus
nTPM: 12.0
2111 Female, age 85, right hemisphere 15.4
2566 Female, age 72, unknown 13.0
2778 Female, age 91, both hemispheres 12.8
2287 Male, age 75, right hemisphere 11.8
2037 Male, age 80, right hemisphere 11.4
1818 Male, age 74, unknown 10.0
2483 Female, age 94, right hemisphere 9.9
Nucleus accumbens
nTPM: 10.2
2391 Female, age 94, left hemisphere 12.3
2824 Male, age 61, right hemisphere 11.1
2286 Male, age 75, left hemisphere 10.4
2732 Male, age 80, right hemisphere 10.4
2698 Female, age 72, unknown 10.1
1806 Female, age 85, left hemisphere 9.6
1783 Male, age 74, unknown 9.4
1856 Female, age 91, right hemisphere 8.5
Nucleus basalis of Meynert
nTPM: 10.1
2393 Male, age 80, right hemisphere 10.5
2484 Female, age 94, left hemisphere 10.1
2569 Male, age 61, both hemispheres 9.9
2821 Male, age 75, both hemispheres 9.8
Nucleus of the diagonal band
nTPM: 8.8
1979 Male, age 74, unknown 10.2
2029 Male, age 61, right hemisphere 8.9
2195 Female, age 85, both hemispheres 8.5
1812 Female, age 91, both hemispheres 8.3
2775 Male, age 80, right hemisphere 8.1
Olfactory tubercle
nTPM: 9.4
2487 Female, age 94, left hemisphere 9.8
2856 Male, age 75, right hemisphere 9.7
1998 Female, age 91, both hemispheres 9.1
1846 Male, age 80, right hemisphere 8.9
Putamen
nTPM: 9.7
2482 Female, age 94, left hemisphere 11.0
2489 Female, age 72, unknown 9.9
2647 Male, age 75, left hemisphere 9.9
1937 Female, age 91, right hemisphere 9.5
2466 Female, age 79, unknown 9.3
1829 Male, age 74, unknown 9.2
1838 Male, age 80, right hemisphere 9.2
Septal nuclei
nTPM: 9.7
2394 Male, age 61, left hemisphere 10.8
2199 Male, age 80, right hemisphere 10.6
2629 Female, age 94, right hemisphere 10.2
2059 Female, age 85, both hemispheres 9.5
2009 Female, age 91, both hemispheres 9.2
1960 Male, age 74, unknown 8.8
2031 Female, age 72, unknown 8.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 7.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 7.5
Samples: 246

Max nTPM: 15.7
Min nTPM: 4.0
Std nTPM: 1.4
Median nTPM: 7.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 15.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 11.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 10.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 10.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 10.6
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 10.6
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 10.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 10.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 10.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 10.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 9.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 7.9
Samples: 246

Max nTPM: 19.9
Min nTPM: 3.0
Std nTPM: 1.9
Median nTPM: 7.9
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 19.9
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 13.9
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 12.7
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 12.4
GTEX-WWYW-0011-R6A-SM-3NB3G 50-59 years, female 12.1
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 12.0
GTEX-144GL-0011-R6a-SM-5P9HW 50-59 years, male 11.4
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 10.8
GTEX-WZTO-0011-R6B-SM-4E3J6 40-49 years, male 10.8
GTEX-NPJ8-0011-R6a-SM-2HMKB 40-49 years, male 10.7
GTEX-14PJM-0011-R6a-SM-6872G 50-59 years, female 10.6
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Brain - Putamen (basal ganglia)
Average nTPM: 7.5
Samples: 205

Max nTPM: 14.3
Min nTPM: 4.1
Std nTPM: 1.4
Median nTPM: 7.5
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 14.3
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 12.4
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 12.3
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 11.4
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 10.8
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 10.6
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 10.4
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 10.4
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 10.1
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 9.7
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 9.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 58.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 44.3
FF:10164-103B2 76 years, female 44.3
Globus pallidus
Scaled Tags Per Million: 58.5
FF:10161-103A8 76 years, female 61.7
FF:10175-103C4 60 years, female 55.2
Nucleus accumbens
Scaled Tags Per Million: 46.2
FF:10037-101F1 23-56 years, mixed 46.2
Putamen
Scaled Tags Per Million: 43.4
FF:10176-103C5 60 years, female 43.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 13.1
Pig sample Sample description nTPM
Caudate
nTPM: 12.4
Samples: 4

Max nTPM: 13.2
Min nTPM: 11.2
Sample A Female 12.2
Sample B Female 12.9
Sample C Male 13.2
Sample D Male 11.2
Putamen
nTPM: 13.1
Samples: 4

Max nTPM: 13.8
Min nTPM: 12.3
Sample A Female 12.5
Sample B Female 13.8
Sample C Male 13.8
Sample D Male 12.3
Septum
nTPM: 12.4
Samples: 4

Max nTPM: 13.7
Min nTPM: 10.8
Sample A Female 13.7
Sample B Female 13.7
Sample C Male 10.8
Sample D Male 11.4
Ventral pallidum
nTPM: 12.7
Samples: 4

Max nTPM: 13.9
Min nTPM: 11.2
Sample A Female 13.7
Sample B Female 13.9
Sample C Male 11.2
Sample D Male 11.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 15.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 15.7
Samples: 4

Max nTPM: 17.2
Min nTPM: 14.6
Sample A Male 17.2
Sample B Male 15.1
Sample C Female 15.7
Sample D Female 14.6
Septum
nTPM: 12.9
Samples: 4

Max nTPM: 14.2
Min nTPM: 11.6
Sample A Male 12.8
Sample B Male 14.2
Sample C Female 11.6
Sample D Female 13.1
Ventral forebrain
nTPM: 13.0
Samples: 4

Max nTPM: 13.8
Min nTPM: 11.9
Sample A Male 13.8
Sample B Male 13.1
Sample C Female 11.9
Sample D Female 13.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
641526 Antisense, RP_040914_01_E04, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
641526 Antisense, RP_040914_01_E04, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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