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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:412.3 nTPM
HPA:412.3 nTPM
GTEx:419.5 nTPM
FANTOM5:312.4 Scaled Tags Per Million
Pig:72.5 nTPM
Mouse:123.2 nTPM
Allen mouse:4.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 412.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 391.5
1870 Female, age 42, unknown 399.3
1827 Male, age 72, unknown 397.3
2586 Male, age 75, left hemisphere 393.0
2219 Male, age 76, both hemispheres 392.9
2666 Male, age 74, left hemisphere 392.5
2019 Male, age 18, unknown 388.9
2828 Female, age 72, unknown 388.7
1830 Male, age 51, unknown 388.5
1833 Male, age 53, unknown 387.3
2411 Female, age 72, unknown 386.4
Dorsal raphe nucleus
nTPM: 389.9
2047 Male, age 72, unknown 396.0
1828 Male, age 53, unknown 393.7
2750 Male, age 76, both hemispheres 393.2
2298 Female, age 72, unknown 388.9
2016 Female, age 72, unknown 377.5
Inferior colliculus
nTPM: 392.0
2849 Male, age 72, unknown 400.3
1890 Male, age 53, unknown 390.3
1848 Female, age 42, unknown 389.3
2097 Female, age 72, unknown 388.0
Median raphe nucleus
nTPM: 412.3
2220 Male, age 76, midline 412.3
Pedunculopontine tegmental nucleus
nTPM: 407.9
2338 Male, age 61, both hemispheres 424.6
2334 Male, age 80, both hemispheres 404.9
1921 Female, age 85, both hemispheres 394.1
Periaquaductal grey, anterior
nTPM: 390.1
1795 Male, age 51, unknown 394.4
1947 Male, age 18, unknown 390.6
2502 Female, age 75, unknown 385.3
Periaquaductal grey, dorsal
nTPM: 386.1
2850 Male, age 76, both hemispheres 403.2
1840 Male, age 53, unknown 385.4
1831 Male, age 72, unknown 382.9
2464 Female, age 72, unknown 372.7
Periaquaductal grey, lateral
nTPM: 384.7
2140 Male, age 76, both hemispheres 388.9
2053 Male, age 18, unknown 384.7
2272 Male, age 74, both hemispheres 380.5
Pretectal area
nTPM: 396.9
1817 Female, age 42, unknown 412.0
1816 Male, age 51, unknown 405.1
1944 Female, age 72, unknown 405.0
2007 Male, age 72, unknown 403.2
2667 Female, age 75, unknown 401.1
2407 Male, age 75, both hemispheres 400.7
1815 Male, age 53, unknown 397.2
2825 Male, age 18, unknown 390.5
2224 Female, age 72, unknown 387.8
2273 Male, age 74, both hemispheres 384.1
2316 Male, age 76, right hemisphere 379.0
Red nucleus
nTPM: 398.0
2725 Female, age 75, unknown 405.9
1821 Female, age 72, unknown 403.1
1865 Male, age 51, unknown 402.9
2584 Male, age 75, left hemisphere 400.1
2785 Male, age 18, unknown 398.4
2769 Male, age 72, unknown 398.1
1904 Male, age 53, unknown 397.4
2503 Female, age 72, unknown 396.7
2227 Male, age 72, unknown 396.3
1954 Female, age 42, unknown 394.3
2588 Male, age 74, left hemisphere 392.2
2823 Male, age 76, right hemisphere 391.2
Substantia nigra
nTPM: 398.3
1916 Female, age 42, unknown 421.7
2699 Male, age 18, unknown 411.1
1889 Female, age 72, unknown 405.5
1851 Male, age 51, unknown 404.6
1941 Male, age 53, unknown 401.5
2665 Male, age 74, both hemispheres 399.5
2409 Female, age 72, unknown 392.2
2583 Male, age 75, right hemisphere 383.7
2590 Female, age 75, unknown 383.0
2241 Male, age 72, unknown 379.9
Superior colliculus
nTPM: 392.9
2587 Male, age 74, left hemisphere 404.7
2668 Female, age 75, unknown 401.2
1796 Male, age 53, unknown 399.1
1913 Female, age 42, unknown 398.0
1895 Male, age 76, right hemisphere 392.8
2087 Female, age 72, unknown 390.7
1995 Male, age 72, unknown 388.4
2261 Male, age 18, unknown 387.8
2664 Male, age 75, both hemispheres 386.3
1839 Male, age 51, unknown 380.5
Ventral tegmental area
nTPM: 397.2
2223 Female, age 72, unknown 408.1
2218 Male, age 76, both hemispheres 403.9
1915 Female, age 42, unknown 403.5
2410 Female, age 72, unknown 390.6
1942 Male, age 51, unknown 389.4
2021 Male, age 53, unknown 387.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 419.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 419.5
Samples: 139

Max nTPM: 962.0
Min nTPM: 239.0
Std nTPM: 95.3
Median nTPM: 408.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 962.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 741.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 678.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 631.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 616.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 609.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 591.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 584.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 569.1
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 565.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 563.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 312.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 312.4
FF:10158-103A5 76 years, female 312.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 72.5
Pig sample Sample description nTPM
Midbrain
nTPM: 72.5
Samples: 4

Max nTPM: 117.9
Min nTPM: 51.4
Sample A Female 117.9
Sample B Female 57.3
Sample C Male 63.5
Sample D Male 51.4
Periaqueductal gray
nTPM: 52.2
Samples: 3

Max nTPM: 59.5
Min nTPM: 46.3
Sample B Female 46.3
Sample C Male 59.5
Sample D Male 50.8
Substantia nigra
nTPM: 64.7
Samples: 4

Max nTPM: 79.3
Min nTPM: 47.6
Sample A Female 79.3
Sample B Female 47.6
Sample C Male 70.9
Sample D Male 60.9
Superior colliculi
nTPM: 69.3
Samples: 4

Max nTPM: 84.0
Min nTPM: 54.6
Sample A Female 84.0
Sample B Female 54.6
Sample C Male 71.5
Sample D Male 67.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 123.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 123.2
Samples: 4

Max nTPM: 138.1
Min nTPM: 104.3
Sample A Male 138.1
Sample B Male 104.3
Sample C Female 114.9
Sample D Female 135.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.0
68117986 Antisense, RP_040929_01_H04, Mouse strain C57BL/6J (56 days, male) 4.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.