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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:28.5 nTPM
HPA:28.5 nTPM
GTEx:30.8 nTPM
FANTOM5:7.3 Scaled Tags Per Million
Pig:74.2 nTPM
Mouse:182.6 nTPM
Allen mouse:11.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 28.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 17.9
2019 Male, age 18, unknown 33.2
2586 Male, age 75, left hemisphere 24.5
1827 Male, age 72, unknown 23.0
2219 Male, age 76, both hemispheres 17.8
2828 Female, age 72, unknown 16.7
2666 Male, age 74, left hemisphere 15.2
2411 Female, age 72, unknown 13.1
1870 Female, age 42, unknown 12.3
1830 Male, age 51, unknown 11.7
1833 Male, age 53, unknown 11.2
Dorsal raphe nucleus
nTPM: 14.9
1828 Male, age 53, unknown 22.9
2298 Female, age 72, unknown 18.2
2047 Male, age 72, unknown 14.6
2016 Female, age 72, unknown 10.9
2750 Male, age 76, both hemispheres 8.0
Inferior colliculus
nTPM: 21.6
2097 Female, age 72, unknown 29.2
1848 Female, age 42, unknown 20.4
1890 Male, age 53, unknown 19.1
2849 Male, age 72, unknown 17.7
Median raphe nucleus
nTPM: 8.2
2220 Male, age 76, midline 8.2
Pedunculopontine tegmental nucleus
nTPM: 14.8
1921 Female, age 85, both hemispheres 18.4
2334 Male, age 80, both hemispheres 14.6
2338 Male, age 61, both hemispheres 11.3
Periaquaductal grey, anterior
nTPM: 22.2
2502 Female, age 75, unknown 24.3
1795 Male, age 51, unknown 22.8
1947 Male, age 18, unknown 19.4
Periaquaductal grey, dorsal
nTPM: 15.1
2464 Female, age 72, unknown 16.8
1840 Male, age 53, unknown 16.4
1831 Male, age 72, unknown 13.7
2850 Male, age 76, both hemispheres 13.7
Periaquaductal grey, lateral
nTPM: 16.5
2272 Male, age 74, both hemispheres 18.0
2053 Male, age 18, unknown 16.1
2140 Male, age 76, both hemispheres 15.4
Pretectal area
nTPM: 28.5
1816 Male, age 51, unknown 47.0
1817 Female, age 42, unknown 41.5
2007 Male, age 72, unknown 40.4
1944 Female, age 72, unknown 40.3
2667 Female, age 75, unknown 29.7
1815 Male, age 53, unknown 28.5
2273 Male, age 74, both hemispheres 22.6
2407 Male, age 75, both hemispheres 19.5
2224 Female, age 72, unknown 16.7
2825 Male, age 18, unknown 14.3
2316 Male, age 76, right hemisphere 13.4
Red nucleus
nTPM: 20.9
2785 Male, age 18, unknown 29.3
1821 Female, age 72, unknown 29.2
1954 Female, age 42, unknown 23.8
1865 Male, age 51, unknown 23.1
2769 Male, age 72, unknown 21.7
2227 Male, age 72, unknown 21.6
2823 Male, age 76, right hemisphere 19.7
2503 Female, age 72, unknown 18.4
2584 Male, age 75, left hemisphere 17.0
2725 Female, age 75, unknown 16.9
1904 Male, age 53, unknown 16.8
2588 Male, age 74, left hemisphere 13.2
Substantia nigra
nTPM: 15.5
1889 Female, age 72, unknown 31.8
1941 Male, age 53, unknown 19.3
2590 Female, age 75, unknown 17.8
2583 Male, age 75, right hemisphere 16.6
2665 Male, age 74, both hemispheres 15.2
1916 Female, age 42, unknown 14.4
1851 Male, age 51, unknown 12.0
2241 Male, age 72, unknown 10.3
2409 Female, age 72, unknown 9.9
2699 Male, age 18, unknown 7.5
Superior colliculus
nTPM: 21.1
2087 Female, age 72, unknown 33.4
2261 Male, age 18, unknown 26.9
2664 Male, age 75, both hemispheres 26.4
1895 Male, age 76, right hemisphere 21.7
1796 Male, age 53, unknown 21.5
1839 Male, age 51, unknown 17.6
1913 Female, age 42, unknown 16.3
2668 Female, age 75, unknown 16.3
2587 Male, age 74, left hemisphere 15.7
1995 Male, age 72, unknown 14.9
Ventral tegmental area
nTPM: 12.6
2410 Female, age 72, unknown 16.5
2223 Female, age 72, unknown 14.7
2218 Male, age 76, both hemispheres 12.7
1915 Female, age 42, unknown 11.5
1942 Male, age 51, unknown 11.2
2021 Male, age 53, unknown 9.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 30.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 30.8
Samples: 139

Max nTPM: 127.9
Min nTPM: 1.8
Std nTPM: 18.9
Median nTPM: 27.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 127.9
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 119.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 100.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 84.1
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 74.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 67.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 65.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 61.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 57.9
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 51.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 50.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 7.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 7.3
FF:10158-103A5 76 years, female 7.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 74.2
Pig sample Sample description nTPM
Midbrain
nTPM: 57.8
Samples: 4

Max nTPM: 104.3
Min nTPM: 30.7
Sample A Female 30.7
Sample B Female 33.0
Sample C Male 104.3
Sample D Male 63.1
Periaqueductal gray
nTPM: 31.9
Samples: 3

Max nTPM: 37.6
Min nTPM: 29.0
Sample B Female 29.0
Sample C Male 37.6
Sample D Male 29.1
Substantia nigra
nTPM: 33.3
Samples: 4

Max nTPM: 54.7
Min nTPM: 18.9
Sample A Female 54.7
Sample B Female 24.0
Sample C Male 35.7
Sample D Male 18.9
Superior colliculi
nTPM: 74.2
Samples: 4

Max nTPM: 118.7
Min nTPM: 55.4
Sample A Female 62.5
Sample B Female 55.4
Sample C Male 118.7
Sample D Male 60.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 182.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 182.6
Samples: 4

Max nTPM: 190.4
Min nTPM: 171.3
Sample A Male 171.3
Sample B Male 190.0
Sample C Female 190.4
Sample D Female 178.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 11.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.9
74581397 Antisense, RP_060117_02_C06, Mouse strain C57BL/6J (56 days, male) 16.9
68196982 Antisense, RP_040928_01_B03, Mouse strain C57BL/6J (56 days, male) 6.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.