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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:33.6 nTPM
HPA:33.6 nTPM
GTEx:21.0 nTPM
FANTOM5:99.9 Scaled Tags Per Million
Pig:42.7 nTPM
Mouse:21.5 nTPM
Allen mouse:1.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 33.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 30.3
2481 Female, age 94, left hemisphere 32.9
2289 Male, age 61, right hemisphere 32.7
2290 Female, age 72, unknown 30.6
1781 Male, age 74, unknown 30.5
1857 Female, age 85, left hemisphere 30.3
1854 Male, age 80, left hemisphere 30.0
2846 Female, age 79, unknown 28.1
2288 Male, age 75, left hemisphere 27.3
Claustrum
nTPM: 26.0
2196 Female, age 79, unknown 29.6
2198 Male, age 80, both hemispheres 26.7
2645 Female, age 72, unknown 26.7
2284 Female, age 91, both hemispheres 26.3
2292 Female, age 85, both hemispheres 26.0
1956 Male, age 74, unknown 25.0
2491 Male, age 75, both hemispheres 24.9
2392 Female, age 94, both hemispheres 24.6
2568 Male, age 61, both hemispheres 24.0
Globus pallidus, externus
nTPM: 33.6
2646 Male, age 61, right hemisphere 42.0
2567 Female, age 72, unknown 32.8
2772 Female, age 79, unknown 32.8
1996 Male, age 80, right hemisphere 31.7
2395 Male, age 75, both hemispheres 28.7
Globus pallidus, internus
nTPM: 31.4
2483 Female, age 94, right hemisphere 36.5
1818 Male, age 74, unknown 32.6
2037 Male, age 80, right hemisphere 32.3
2566 Female, age 72, unknown 31.1
2111 Female, age 85, right hemisphere 30.3
2778 Female, age 91, both hemispheres 30.0
2287 Male, age 75, right hemisphere 27.3
Nucleus accumbens
nTPM: 29.7
1856 Female, age 91, right hemisphere 30.6
2732 Male, age 80, right hemisphere 30.6
2824 Male, age 61, right hemisphere 30.6
1806 Female, age 85, left hemisphere 30.1
2286 Male, age 75, left hemisphere 29.7
1783 Male, age 74, unknown 29.6
2698 Female, age 72, unknown 28.5
2391 Female, age 94, left hemisphere 27.5
Nucleus basalis of Meynert
nTPM: 32.3
2569 Male, age 61, both hemispheres 43.5
2393 Male, age 80, right hemisphere 29.3
2484 Female, age 94, left hemisphere 29.1
2821 Male, age 75, both hemispheres 27.2
Nucleus of the diagonal band
nTPM: 27.3
1979 Male, age 74, unknown 28.7
2775 Male, age 80, right hemisphere 27.4
2195 Female, age 85, both hemispheres 27.3
1812 Female, age 91, both hemispheres 26.9
2029 Male, age 61, right hemisphere 26.1
Olfactory tubercle
nTPM: 26.9
1846 Male, age 80, right hemisphere 28.0
2856 Male, age 75, right hemisphere 27.5
2487 Female, age 94, left hemisphere 26.3
1998 Female, age 91, both hemispheres 26.0
Putamen
nTPM: 29.6
2482 Female, age 94, left hemisphere 32.7
2489 Female, age 72, unknown 31.1
1937 Female, age 91, right hemisphere 30.4
2647 Male, age 75, left hemisphere 29.9
1829 Male, age 74, unknown 28.0
2466 Female, age 79, unknown 27.8
1838 Male, age 80, right hemisphere 26.9
Septal nuclei
nTPM: 28.4
2199 Male, age 80, right hemisphere 32.2
2394 Male, age 61, left hemisphere 31.2
2059 Female, age 85, both hemispheres 30.4
1960 Male, age 74, unknown 26.9
2009 Female, age 91, both hemispheres 26.7
2031 Female, age 72, unknown 26.0
2629 Female, age 94, right hemisphere 25.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 21.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 20.7
Samples: 246

Max nTPM: 89.4
Min nTPM: 4.9
Std nTPM: 13.2
Median nTPM: 17.0
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 89.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 70.6
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 68.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 64.6
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 60.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 56.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 56.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 53.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 53.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 52.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 48.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 21.0
Samples: 246

Max nTPM: 115.7
Min nTPM: 4.2
Std nTPM: 17.3
Median nTPM: 15.2
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 115.7
GTEX-13QJC-0011-R6a-SM-5S2VI 60-69 years, female 111.6
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 100.8
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 88.5
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 81.2
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 78.4
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 68.8
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 66.1
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 65.9
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 64.8
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 64.7
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Brain - Putamen (basal ganglia)
Average nTPM: 20.4
Samples: 205

Max nTPM: 90.3
Min nTPM: 6.1
Std nTPM: 13.6
Median nTPM: 15.5
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 90.3
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 85.0
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 78.2
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 57.2
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 56.2
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 52.8
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 52.4
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 51.4
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 49.9
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 48.4
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 47.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 99.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 99.9
FF:10164-103B2 76 years, female 99.9
Globus pallidus
Scaled Tags Per Million: 57.9
FF:10161-103A8 76 years, female 72.4
FF:10175-103C4 60 years, female 43.4
Nucleus accumbens
Scaled Tags Per Million: 46.3
FF:10037-101F1 23-56 years, mixed 46.3
Putamen
Scaled Tags Per Million: 41.9
FF:10176-103C5 60 years, female 41.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 42.7
Pig sample Sample description nTPM
Caudate
nTPM: 42.7
Samples: 4

Max nTPM: 59.0
Min nTPM: 32.4
Sample A Female 32.4
Sample B Female 59.0
Sample C Male 45.0
Sample D Male 34.5
Putamen
nTPM: 35.9
Samples: 4

Max nTPM: 38.1
Min nTPM: 31.2
Sample A Female 31.2
Sample B Female 38.1
Sample C Male 36.6
Sample D Male 37.7
Septum
nTPM: 38.0
Samples: 4

Max nTPM: 44.2
Min nTPM: 33.4
Sample A Female 33.4
Sample B Female 40.6
Sample C Male 44.2
Sample D Male 33.7
Ventral pallidum
nTPM: 33.5
Samples: 4

Max nTPM: 37.6
Min nTPM: 28.1
Sample A Female 28.1
Sample B Female 37.6
Sample C Male 37.3
Sample D Male 31.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 21.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 21.5
Samples: 4

Max nTPM: 23.7
Min nTPM: 18.5
Sample A Male 18.5
Sample B Male 23.7
Sample C Female 20.2
Sample D Female 23.6
Septum
nTPM: 13.4
Samples: 4

Max nTPM: 14.8
Min nTPM: 12.4
Sample A Male 14.0
Sample B Male 12.5
Sample C Female 14.8
Sample D Female 12.4
Ventral forebrain
nTPM: 17.2
Samples: 4

Max nTPM: 20.8
Min nTPM: 15.2
Sample A Male 16.5
Sample B Male 15.2
Sample C Female 20.8
Sample D Female 16.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.1
75695652 Antisense, RP_060518_04_C03, Mouse strain C57BL/6J (56 days, male) 1.1
Pallidum
Expression energy: 1.1
75695652 Antisense, RP_060518_04_C03, Mouse strain C57BL/6J (56 days, male) 1.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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