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GBF1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:37.3 nTPM
HPA:37.3 nTPM
GTEx:14.5 nTPM
FANTOM5:55.8 Scaled Tags Per Million
Pig:34.1 nTPM
Mouse:13.6 nTPM
Allen mouse:2.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 37.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 29.1
2586 Male, age 75, left hemisphere 36.7
2666 Male, age 74, left hemisphere 33.4
2219 Male, age 76, both hemispheres 30.1
2019 Male, age 18, unknown 29.7
1827 Male, age 72, unknown 29.0
2828 Female, age 72, unknown 28.7
1833 Male, age 53, unknown 28.2
1830 Male, age 51, unknown 25.5
1870 Female, age 42, unknown 25.0
2411 Female, age 72, unknown 24.9
Dorsal raphe nucleus
nTPM: 26.9
2298 Female, age 72, unknown 27.6
1828 Male, age 53, unknown 27.3
2016 Female, age 72, unknown 27.1
2047 Male, age 72, unknown 27.0
2750 Male, age 76, both hemispheres 25.7
Inferior colliculus
nTPM: 26.9
2097 Female, age 72, unknown 28.0
1890 Male, age 53, unknown 27.9
2849 Male, age 72, unknown 26.6
1848 Female, age 42, unknown 25.1
Median raphe nucleus
nTPM: 27.2
2220 Male, age 76, midline 27.2
Pedunculopontine tegmental nucleus
nTPM: 26.3
1921 Female, age 85, both hemispheres 28.2
2334 Male, age 80, both hemispheres 27.2
2338 Male, age 61, both hemispheres 23.4
Periaquaductal grey, anterior
nTPM: 28.3
2502 Female, age 75, unknown 29.9
1947 Male, age 18, unknown 27.6
1795 Male, age 51, unknown 27.3
Periaquaductal grey, dorsal
nTPM: 27.1
1831 Male, age 72, unknown 28.5
2850 Male, age 76, both hemispheres 28.5
1840 Male, age 53, unknown 27.5
2464 Female, age 72, unknown 23.9
Periaquaductal grey, lateral
nTPM: 26.4
2140 Male, age 76, both hemispheres 28.4
2272 Male, age 74, both hemispheres 26.8
2053 Male, age 18, unknown 23.9
Pretectal area
nTPM: 29.1
1816 Male, age 51, unknown 34.4
1944 Female, age 72, unknown 33.2
1815 Male, age 53, unknown 31.6
1817 Female, age 42, unknown 31.3
2007 Male, age 72, unknown 30.6
2667 Female, age 75, unknown 30.0
2407 Male, age 75, both hemispheres 29.5
2825 Male, age 18, unknown 26.4
2224 Female, age 72, unknown 25.8
2316 Male, age 76, right hemisphere 24.2
2273 Male, age 74, both hemispheres 22.7
Red nucleus
nTPM: 27.2
2584 Male, age 75, left hemisphere 30.8
2725 Female, age 75, unknown 29.3
1821 Female, age 72, unknown 28.7
2785 Male, age 18, unknown 28.2
2823 Male, age 76, right hemisphere 27.9
2588 Male, age 74, left hemisphere 27.6
2769 Male, age 72, unknown 27.2
1904 Male, age 53, unknown 26.6
2227 Male, age 72, unknown 25.9
1954 Female, age 42, unknown 25.8
1865 Male, age 51, unknown 25.1
2503 Female, age 72, unknown 23.6
Substantia nigra
nTPM: 37.3
1916 Female, age 42, unknown 50.5
2699 Male, age 18, unknown 44.5
1851 Male, age 51, unknown 43.4
2665 Male, age 74, both hemispheres 41.3
1941 Male, age 53, unknown 36.5
2241 Male, age 72, unknown 36.4
1889 Female, age 72, unknown 33.0
2409 Female, age 72, unknown 29.4
2583 Male, age 75, right hemisphere 29.2
2590 Female, age 75, unknown 28.9
Superior colliculus
nTPM: 28.1
2664 Male, age 75, both hemispheres 35.0
2087 Female, age 72, unknown 30.7
1796 Male, age 53, unknown 30.6
1895 Male, age 76, right hemisphere 29.3
2668 Female, age 75, unknown 29.1
2261 Male, age 18, unknown 26.8
1995 Male, age 72, unknown 25.9
2587 Male, age 74, left hemisphere 24.9
1913 Female, age 42, unknown 24.6
1839 Male, age 51, unknown 24.4
Ventral tegmental area
nTPM: 31.5
1915 Female, age 42, unknown 38.0
2410 Female, age 72, unknown 36.4
1942 Male, age 51, unknown 32.5
2218 Male, age 76, both hemispheres 32.3
2021 Male, age 53, unknown 25.0
2223 Female, age 72, unknown 24.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 14.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.5
Samples: 139

Max nTPM: 30.4
Min nTPM: 6.1
Std nTPM: 4.4
Median nTPM: 13.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 30.4
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 25.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 24.9
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 24.9
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 24.2
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 23.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 23.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 23.0
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 22.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 22.3
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 22.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 55.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 55.8
FF:10158-103A5 76 years, female 55.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 34.1
Pig sample Sample description nTPM
Midbrain
nTPM: 26.1
Samples: 4

Max nTPM: 35.4
Min nTPM: 22.3
Sample A Female 22.3
Sample B Female 22.6
Sample C Male 35.4
Sample D Male 24.1
Periaqueductal gray
nTPM: 21.2
Samples: 3

Max nTPM: 23.3
Min nTPM: 19.6
Sample B Female 20.6
Sample C Male 23.3
Sample D Male 19.6
Substantia nigra
nTPM: 34.1
Samples: 4

Max nTPM: 47.6
Min nTPM: 22.9
Sample A Female 38.4
Sample B Female 27.6
Sample C Male 47.6
Sample D Male 22.9
Superior colliculi
nTPM: 26.6
Samples: 4

Max nTPM: 31.8
Min nTPM: 22.7
Sample A Female 24.6
Sample B Female 22.7
Sample C Male 31.8
Sample D Male 27.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 13.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.7
Samples: 4

Max nTPM: 15.4
Min nTPM: 10.9
Sample A Male 10.9
Sample B Male 13.7
Sample C Female 14.6
Sample D Female 15.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.2
73513780 Antisense, RP_051121_02_G02, Mouse strain C57BL/6J (56 days, male) 2.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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